Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq38 212 8e-50 seq13 212 8e-50 seq157 152 7e-32 >seq38 Length=108757 Score = 212 bits (234), Expect = 8e-50 Identities = 861/1333 (65%), Gaps = 33/1333 (2%) Strand=Plus/Plus Query 64984 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 ||||||| || || | ||| |||||||| | ||||| |||||| | ||||||||| | Sbjct 86881 CGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGA 86940 Query 65044 TAGTTTTATAAACTCGCTTAATATCTTCTGGAA--GGTTTGTATTC--TGAATGGATCCA 65099 ||| || || | | ||| | ||| |||||| | || || | || | |||||| Sbjct 86941 CAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTG-ATGCGTTGGACTGATCCA 86999 Query 65100 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 65159 || || ||||| | ||||| || || |||||||| ||||| || | Sbjct 87000 TTCTCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCC 87059 Query 65160 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 65219 | | | |||||||| || | ||| ||||| || | | || | |||||||| ||| Sbjct 87060 TTCAACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATA 87119 Query 65220 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 65279 || || || |||||||| | | |||| || || || | ||| |||| || |||||||| Sbjct 87120 TTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTT 87179 Query 65280 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 65339 ||||| || |||| ||| ||| |||| | |||||| | | ||| | ||| Sbjct 87180 GGCATTGGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGA 87239 Query 65340 GGTTCCCAATTCCAAAGATCCGACG-GTACAA--CNNNNNNNNNNNNNNNTTGTAGAATA 65396 | ||||| | ||||| || || | ||| | | || | | | Sbjct 87240 GCATCCCAGT-CCAAA--TCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCA-A 87295 Query 65397 CCGT--TACTGGCGTACGA--TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 | || | || | | | |||| | || || |||||| || || || || || | Sbjct 87296 CTGTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAAT 87355 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 ||||| ||||| | ||| |||| || ||| |||| ||||||||||| || || || Sbjct 87356 CTCACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTC 87415 Query 65513 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 65572 || ||| | | || |||||| | | || || || || || | |||||| Sbjct 87416 TTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTG 87475 Query 65573 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 65632 ||| |||| ||||||||||| || | | | || ||| | | || || | ||| || Sbjct 87476 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 87535 Query 65633 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 65692 ||||||| || || || || || | || || || ||||| || | || Sbjct 87536 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 87595 Query 65693 TTTGAGAAAATC--AAATCGCTCATCTATTACAAACATG--TTCAATGCA-ACAGATGCC 65747 ||| ||| || || | | || | | | |||| | | | || | | | ||| || Sbjct 87596 TTTCTCAAAGTCGTAAGTAG-TCTTGT-TCACAACAAAGGCTGGAAGGGAGATAGAAGCA 87653 Query 65748 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 65807 || ||||| ||||| | || | || | | || | | || || |||||||| ||| Sbjct 87654 AGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTA 87713 Query 65808 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 65867 || ||||||||||| || || || ||||| ||| ||| ||||||| ||||| || || Sbjct 87714 CTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTAC 87773 Query 65868 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCG 65926 | ||| |||| |||||||| || | ||||| || ||||| || | ||| | | || | Sbjct 87774 AACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCT-G 87832 Query 65927 AGCCTTTATTA-TAGATTTG-TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCG 65984 |||||| || | | | | | | |||| | ||| ||| | ||| | | ||| Sbjct 87833 AGCCTTGATAACTTTACGGGCCAACCCTTT--GCGTTCATATGATTCATAAAGTGCTTCA 87890 Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 |||| || ||||| | ||||| || || |||| ||||| | | ||||| Sbjct 87891 AACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAG 87950 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAA 66103 || || | || ||| || |||||||| | ||| ||||| ||||| ||| || || Sbjct 87951 TCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC-ATAGAACAA 88009 Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163 |||| | | | |||||| || || |||||||| || ||||| ||||| | | || Sbjct 88010 GTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGAT 88069 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 66223 ||| ||||| || |||||||| || || | | || || || ||||| ||||| || Sbjct 88070 ATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTG 88129 Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT-GGATG 66282 ||| | || | ||| |||||||| | || | | ||| ||||| || ||||| | ||| Sbjct 88130 ATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATG 88189 Query 66283 TACCATTGGTCCC 66295 | || ||||| || Sbjct 88190 T-CCGTTGGTTCC 88201 >seq13 Length=692062 Score = 212 bits (234), Expect = 8e-50 Identities = 861/1333 (65%), Gaps = 33/1333 (2%) Strand=Plus/Plus Query 64984 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 ||||||| || || | ||| |||||||| | ||||| |||||| | ||||||||| | Sbjct 276677 CGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGA 276736 Query 65044 TAGTTTTATAAACTCGCTTAATATCTTCTGGAA--GGTTTGTATTC--TGAATGGATCCA 65099 ||| || || | | ||| | ||| |||||| | || || | || | |||||| Sbjct 276737 CAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTG-ATGCGTTGGACTGATCCA 276795 Query 65100 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 65159 || || ||||| | ||||| || || |||||||| ||||| || | Sbjct 276796 TTCTCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCC 276855 Query 65160 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 65219 | | | |||||||| || | ||| ||||| || | | || | |||||||| ||| Sbjct 276856 TTCAACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATA 276915 Query 65220 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 65279 || || || |||||||| | | |||| || || || | ||| |||| || |||||||| Sbjct 276916 TTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTT 276975 Query 65280 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 65339 ||||| || |||| ||| ||| |||| | |||||| | | ||| | ||| Sbjct 276976 GGCATTGGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGA 277035 Query 65340 GGTTCCCAATTCCAAAGATCCGACG-GTACAA--CNNNNNNNNNNNNNNNTTGTAGAATA 65396 | ||||| | ||||| || || | ||| | | || | | | Sbjct 277036 GCATCCCAGT-CCAAA--TCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCA-A 277091 Query 65397 CCGT--TACTGGCGTACGA--TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 | || | || | | | |||| | || || |||||| || || || || || | Sbjct 277092 CTGTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAAT 277151 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 ||||| ||||| | ||| |||| || ||| |||| ||||||||||| || || || Sbjct 277152 CTCACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTC 277211 Query 65513 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 65572 || ||| | | || |||||| | | || || || || || | |||||| Sbjct 277212 TTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTG 277271 Query 65573 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 65632 ||| |||| ||||||||||| || | | | || ||| | | || || | ||| || Sbjct 277272 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 277331 Query 65633 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 65692 ||||||| || || || || || | || || || ||||| || | || Sbjct 277332 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 277391 Query 65693 TTTGAGAAAATC--AAATCGCTCATCTATTACAAACATG--TTCAATGCA-ACAGATGCC 65747 ||| ||| || || | | || | | | |||| | | | || | | | ||| || Sbjct 277392 TTTCTCAAAGTCGTAAGTAG-TCTTGT-TCACAACAAAGGCTGGAAGGGAGATAGAAGCA 277449 Query 65748 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 65807 || ||||| ||||| | || | || | | || | | || || |||||||| ||| Sbjct 277450 AGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTA 277509 Query 65808 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 65867 || ||||||||||| || || || ||||| ||| ||| ||||||| ||||| || || Sbjct 277510 CTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTAC 277569 Query 65868 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCG 65926 | ||| |||| |||||||| || | ||||| || ||||| || | ||| | | || | Sbjct 277570 AACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCT-G 277628 Query 65927 AGCCTTTATTA-TAGATTTG-TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCG 65984 |||||| || | | | | | | |||| | ||| ||| | ||| | | ||| Sbjct 277629 AGCCTTGATAACTTTACGGGCCAACCCTTT--GCGTTCATATGATTCATAAAGTGCTTCA 277686 Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 |||| || ||||| | ||||| || || |||| ||||| | | ||||| Sbjct 277687 AACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAG 277746 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAA 66103 || || | || ||| || |||||||| | ||| ||||| ||||| ||| || || Sbjct 277747 TCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC-ATAGAACAA 277805 Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163 |||| | | | |||||| || || |||||||| || ||||| ||||| | | || Sbjct 277806 GTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGAT 277865 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 66223 ||| ||||| || |||||||| || || | | || || || ||||| ||||| || Sbjct 277866 ATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTG 277925 Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT-GGATG 66282 ||| | || | ||| |||||||| | || | | ||| ||||| || ||||| | ||| Sbjct 277926 ATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATG 277985 Query 66283 TACCATTGGTCCC 66295 | || ||||| || Sbjct 277986 T-CCGTTGGTTCC 277997 >seq157 Length=558770 Score = 152 bits (168), Expect = 7e-32 Identities = 351/524 (67%), Gaps = 26/524 (5%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| |||||||| ||||| || || || || || || || |||| || || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||||| || || || || || || || | || | | ||||| ||||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAA---AGAAAC 322393 Query 35986 CAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 36042 ||| ||| |||||||| ||||| || || |||||| ||| | |||||||| || Sbjct 322394 CAAAAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAAT 322453 Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 ||||| || || || || || | | ||||||||| |||| ||| || || | | Sbjct 322454 CAGTTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGAC 322513 Query 36103 AAT-----AGA--TATT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 36154 ||| ||| ||| |||||| | | || | ||| || |||||| Sbjct 322514 AATCTTGTAGACGTATCGACTGTTGGCTTATTC------TTCAACAAGC---TAAACAAA 322564 Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 | ||| || || || ||| || ||||||||||| ||| | || || || || || Sbjct 322565 AGACAAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTA 322624 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 || || ||||| | ||||||||| || ||||| || ||||| ||||| || ||||| ||| Sbjct 322625 AGGCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAG 322684 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA---CTGTCA 36331 |||||||| || || | || || |||| ||| | ||| | | || | ||||| Sbjct 322685 AAAATTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCA 322744 Query 36332 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 |||||||| |||||||||||||||||||| | | ||| || Sbjct 322745 GAGATCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169204731080