Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq335 100 3e-16 seq30 91.5 1e-13 >seq335 Length=386496 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || |||||| |||| ||||| || || || || || || ||||| || Sbjct 157813 GTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCCTT 157754 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| || | | || | ||||| | || ||| ||||| | ||| | Sbjct 157753 GTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGAT 157694 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCA 139763 ||||||||||| | ||||||||||| ||||||| Sbjct 157693 GGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || |||||| |||| ||||| ||||| || || || || || || || Sbjct 39407 GTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCCTT 39466 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| | || ||| ||||| | ||| | Sbjct 39467 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 39526 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCA 139763 ||||| ||||| | ||||||||||| ||||||| Sbjct 39527 TGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | ||| | ||||| |||||||||||||| || || Sbjct 38984 CCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAG 39043 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||| || || ||| |||||| ||| ||||| || || || Sbjct 39044 AGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGG 39103 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | || |||| || || ||| Sbjct 39104 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACC 39163 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || ||||| || || || || || |||||| Sbjct 39164 TCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 39211 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || || || || ||||||||||| ||| | Sbjct 38756 CCTCCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGAC 38815 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || ||||| | || ||||||||||| || || || Sbjct 38816 AAAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGA 38875 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | ||| | ||||||| | ||| || Sbjct 38876 ATACCCTCCTTATC-CTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGAC 38934 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || | || || ||||| || |||||| Sbjct 38935 TTCCAAGGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTGCATA 38983 >seq30 Length=118212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || |||||| |||| ||||| ||||| || || || || ||||| || Sbjct 47304 GTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCCTT 47245 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| || | | || | ||||| | || ||| ||||| | ||| | Sbjct 47244 GTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGAT 47185 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCA 139763 ||||||||||| | || || || || ||||||| Sbjct 47184 GGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061290250400