Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 174 2e-38 seq13 174 2e-38 seq157 152 7e-32 >seq38 Length=108757 Score = 174 bits (192), Expect = 2e-38 Identities = 564/861 (66%), Gaps = 15/861 (2%) Strand=Plus/Plus Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || ||||||||||| | ||||| ||||| | || | || || ||| | Sbjct 87332 GTATGGACCGTCTTTTTCGGCAATCTCACACGAAGCCTCCACGGCAGCGTAGTACATGTT 87391 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 71510 ||| || |||||||| || || |||| ||| | | || |||||| | | Sbjct 87392 TTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTT 87451 Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 || || || || || | ||||||||| |||| ||||||||||| ||| | | | || || Sbjct 87452 GATGAAAGCATCGGCAAGTCCTTGAACTCCAAGACCGATAGGTCGGTGACGCATGTTTGA 87511 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 | | || || | ||| || ||||||| || || || || || | || || Sbjct 87512 GTTCTTGGCCTCAATGACAGGGTAGAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGT 87571 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATC--AAATC-TCCCATCTATTACAAA 71687 || ||||| || | ||||| ||| || || | || | | ||||| Sbjct 87572 CATGACTTTAGTGACCTGGCGGAGTTTCTCAAAGTCGTAAGTAGTCTTGTTCACAACAAA 87631 Query 71688 CACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATT 71746 | | |||| | | ||| || || ||||| ||||| | || | || | | || | Sbjct 87632 GGC-TGGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACT 87690 Query 71747 GTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806 | ||||| |||||||| ||||| ||||||||||| || || || ||||| ||| || Sbjct 87691 CGACGATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACT 87750 Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866 | ||||||| ||||| || || | || | || |||||||| || | ||||| || | Sbjct 87751 TGCTGTTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAA 87810 Query 71867 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTG--TATCTCTTTTCTCTTT 71923 |||| || | ||| | | || ||||||| || | || | | | |||| | || Sbjct 87811 TAATGGCGTACCAAAGCTTCT-GAGCCTTGATAACTTTACGGGCCAACCCTTT--GCGTT 87867 Query 71924 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACAT 71982 | ||| | ||| | | ||| |||| || |||| |||| | || || || || | Sbjct 87868 CATATGATTCATAAAGTGCTTCAAACTTTTCGCCCC-AGCAGTCTTCCAACCCTGGCGCT 87926 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||| | ||||| | | ||||| || |||| | || || |||||||| | ||| Sbjct 87927 TCACTTGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCA 87986 Query 72043 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 ||||| ||||| ||| || | |||| | | | ||||| || || |||||||| Sbjct 87987 CAGATCCAGAGAGC-ATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTT 88045 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 || ||||| ||||| | | ||||| | ||||| || |||||||| || || | | Sbjct 88046 CTTGAGATCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGC 88105 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 || || || ||||| ||||| ||||| | || | ||| |||||||| | || | | Sbjct 88106 CCCGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAG 88165 Query 72222 CATTGGAATAATACCATTGGA 72242 ||| ||||| || ||||| || Sbjct 88166 CATCGGAATGATTCCATTCGA 88186 >seq13 Length=692062 Score = 174 bits (192), Expect = 2e-38 Identities = 564/861 (66%), Gaps = 15/861 (2%) Strand=Plus/Plus Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || ||||||||||| | ||||| ||||| | || | || || ||| | Sbjct 277128 GTATGGACCGTCTTTTTCGGCAATCTCACACGAAGCCTCCACGGCAGCGTAGTACATGTT 277187 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 71510 ||| || |||||||| || || |||| ||| | | || |||||| | | Sbjct 277188 TTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTT 277247 Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 || || || || || | ||||||||| |||| ||||||||||| ||| | | | || || Sbjct 277248 GATGAAAGCATCGGCAAGTCCTTGAACTCCAAGACCGATAGGTCGGTGACGCATGTTTGA 277307 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 | | || || | ||| || ||||||| || || || || || | || || Sbjct 277308 GTTCTTGGCCTCAATGACAGGGTAGAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGT 277367 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATC--AAATC-TCCCATCTATTACAAA 71687 || ||||| || | ||||| ||| || || | || | | ||||| Sbjct 277368 CATGACTTTAGTGACCTGGCGGAGTTTCTCAAAGTCGTAAGTAGTCTTGTTCACAACAAA 277427 Query 71688 CACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATT 71746 | | |||| | | ||| || || ||||| ||||| | || | || | | || | Sbjct 277428 GGC-TGGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACT 277486 Query 71747 GTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806 | ||||| |||||||| ||||| ||||||||||| || || || ||||| ||| || Sbjct 277487 CGACGATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACT 277546 Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866 | ||||||| ||||| || || | || | || |||||||| || | ||||| || | Sbjct 277547 TGCTGTTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAA 277606 Query 71867 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTG--TATCTCTTTTCTCTTT 71923 |||| || | ||| | | || ||||||| || | || | | | |||| | || Sbjct 277607 TAATGGCGTACCAAAGCTTCT-GAGCCTTGATAACTTTACGGGCCAACCCTTT--GCGTT 277663 Query 71924 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACAT 71982 | ||| | ||| | | ||| |||| || |||| |||| | || || || || | Sbjct 277664 CATATGATTCATAAAGTGCTTCAAACTTTTCGCCCC-AGCAGTCTTCCAACCCTGGCGCT 277722 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||| | ||||| | | ||||| || |||| | || || |||||||| | ||| Sbjct 277723 TCACTTGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCA 277782 Query 72043 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 ||||| ||||| ||| || | |||| | | | ||||| || || |||||||| Sbjct 277783 CAGATCCAGAGAGC-ATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTT 277841 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 || ||||| ||||| | | ||||| | ||||| || |||||||| || || | | Sbjct 277842 CTTGAGATCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGC 277901 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 || || || ||||| ||||| ||||| | || | ||| |||||||| | || | | Sbjct 277902 CCCGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAG 277961 Query 72222 CATTGGAATAATACCATTGGA 72242 ||| ||||| || ||||| || Sbjct 277962 CATCGGAATGATTCCATTCGA 277982 >seq157 Length=558770 Score = 152 bits (168), Expect = 7e-32 Identities = 350/524 (67%), Gaps = 26/524 (5%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| |||||||| ||||| || || || || || |||||||||| ||| || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||||| ||||| || || || || || | || | | ||||| ||||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAA---AGAAAC 322393 Query 41893 CAA---TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 41949 ||| ||| ||||||| |||||| || || |||||| ||| | |||||||| || Sbjct 322394 CAAAAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAAT 322453 Query 41950 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 ||||| || || || || || | | ||||||||| |||| ||| || || | | Sbjct 322454 CAGTTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGAC 322513 Query 42010 AAT-----AGATCTT---ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 42061 ||| ||| | |||||| | | || | ||| || |||||| Sbjct 322514 AATCTTGTAGACGTATCGACTGTTGGCTTATTC------TTCAACAAGC---TAAACAAA 322564 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 | ||| || || || ||| || ||||| ||||| ||| | || || || || || Sbjct 322565 AGACAAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTA 322624 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 || || ||||| | ||||||||| || ||||| || || || ||||| || ||||| ||| Sbjct 322625 AGGCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAG 322684 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCA 42238 || ||||| || || | || || |||| ||| | ||| | | || | ||||| Sbjct 322685 AAAATTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCA 322744 Query 42239 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 |||||||| |||||||||||||||||||| | | ||| || Sbjct 322745 GAGATCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135533902120