Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq157 127 3e-24 >seq157 Length=558770 Score = 127 bits (140), Expect = 3e-24 Identities = 305/461 (66%), Gaps = 13/461 (3%) Strand=Plus/Minus Query 125403 GACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 ||||||||||| | | || || | || || || ||||||| ||| ||||| || ||| Sbjct 322743 GACAAGTCTTCCTCCTTCGCAGAACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTC 322684 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || ||| ||||| ||||||| |||||||||||||| || | ||||| || || Sbjct 322683 TTCTCTGGTTCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCTT 322624 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | ||| ||| | || || ||||||||||||| ||| ||||||||| ||| Sbjct 322623 ACATTCTCTAATGAGCTCATTTCCAGAGACGAGGGCCTCCACACTGACTTTGCTTGTCTT 322564 Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATT 125639 |||| || || | || | | ||| | | | | ||| ||| ||| Sbjct 322563 TTGTT-------TAGCTTGTTGAAGAAT---AAGCCAACAGTCGATACGTCTACAAGATT 322514 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATG 125699 || | || || || | | || ||||| ||| | | || |||| || || | || Sbjct 322513 GTCTCTGAAGCTGTCGAGCTTGAGCAAGAATTTTTGATTGACGCCCTCCCTGTGAAACTG 322454 Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 ||||| ||||||| | | ||| || ||||||| || || || ||||| | || || Sbjct 322453 ATTGGAATGAACTCTGACTTGATGAGCCAGTACATTGAATTCGTCGCAGACAGACTTTTG 322394 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 ||| | | ||| | ||||||| | |||| |||||||| |||||| | Sbjct 322393 GTTTCTTTGGGCTGTCCTAAGCTCTACAACGTCGAGAACCCCTTTGACTTCATGGATCTC 322334 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860 || || | | || ||||||||||| || |||||||| || Sbjct 322333 ATCTCCTTGCAAGGAAAGACCAACTTCTTTGAGAAGAAAGT 322293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055151964120