Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq335 98.7 7e-16 seq30 98.7 7e-16 >seq335 Length=386496 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||| || || | | ||||||| || || Sbjct 159091 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGC 159032 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||||||||| |||||| |||||||||||| || || || ||| Sbjct 159031 TTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTG 158972 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || |||||||| ||| || || || || ||||| || || ||| Sbjct 158971 GCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATGGTCTTTCCAGTC 158912 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || || || ||||||||| Sbjct 158911 AAAGTCTTGACGAAGATTTGCATA 158888 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || || ||||||||||| || | | | || || | ||| Sbjct 38552 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCATCCTCAAGTTGC 38611 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||||||| || ||||| ||| |||||||| ||||| || ||| Sbjct 38612 TTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTG 38671 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || |||||||| || || || || || ||||| || || ||| Sbjct 38672 GCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGTCTTGCCGGTC 38731 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || ||||| ||||||||| Sbjct 38732 AAAGTCTTGACAAAGATTTGCATA 38755 >seq30 Length=118212 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||| || || | | ||||||| || || Sbjct 48583 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGC 48524 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||||||||| |||||| |||||||||||| || || || ||| Sbjct 48523 TTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTG 48464 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || |||||||| ||| || || || || || || || || ||| Sbjct 48463 GCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGTCTTTCCAGTC 48404 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || ||||| ||||||||| Sbjct 48403 AAAGTCTTGACAAAGATTTGCATA 48380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177271056217