Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq335 149 1e-30 seq30 122 2e-22 >seq335 Length=386496 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || |||||||| || |||| || ||||| | || ||||| Sbjct 39014 GTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCCAACTGCTTTCCG 39073 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || ||||| || |||||||| || ||||| ||||| || || Sbjct 39074 GCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 39133 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| | ||| ||||| || ||||| ||||| ||||| | || Sbjct 39134 ACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATGGTCTTTCCAGTCAAAGTC 39193 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 39194 TTGACAAAGATCTGCAT 39210 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| |||||||| || | ||| | ||| ||||| || || |||||| Sbjct 38786 GTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCTTCAAGCTGCTTTCCA 38845 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || || ||||| || || || || |||||||||||||| || || Sbjct 38846 GCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTGGCCTTC 38905 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| | || || || | ||||| ||||| ||||||||||| Sbjct 38906 ACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTCTTTCCAGTAAGTGTC 38965 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 38966 TTGACGAAGATCTGCAT 38982 Score = 116 bits (128), Expect = 9e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | || ||||| ||||| ||||||||||| || || | ||| || || | Sbjct 158525 CAGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 158466 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || |||||||| || ||||| ||||| || || || || || | |||||| | || Sbjct 158465 GTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATT 158406 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || |||||||| ||||| | || || || || |||||||| Sbjct 158405 CAACCTCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 158354 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || |||||||| || || | |||||||| | || |||||| Sbjct 159085 GTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCA 159026 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || |||||||| |||||||| ||||| || || Sbjct 159025 GCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTA 158966 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | ||| || || | || || ||||| ||||| | || Sbjct 158965 ACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTC 158906 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 158905 TTGACGAAGATTTGCAT 158889 Score = 105 bits (116), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | ||||||||| || || ||||||||||| || || | ||| || |||| Sbjct 39391 CAGAGAGAGTACGACCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAG 39450 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || || || || || || ||||| || || ||||| || | ||| || | | Sbjct 39451 GTGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACT 39510 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 | ||||| || || || ||||| || || || |||||||| || || |||| Sbjct 39511 CGACCTCGAGGGTGATTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 105 bits (116), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | |||||||| || || ||||||||||| || || | |||||| || | Sbjct 157829 CAGAGAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTG 157770 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || |||||||| || ||||| || || || || ||||| || | || || | | Sbjct 157769 GTGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACT 157710 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 | ||||| || || || ||||| || || || |||||||| || || |||| Sbjct 157709 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 >seq30 Length=118212 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || |||||||| || || | |||||||| | || |||||| Sbjct 48577 GTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCA 48518 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || |||||||| |||||||| ||||| || || Sbjct 48517 GCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTA 48458 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | ||| || || | || |||||||| ||||| | || Sbjct 48457 ACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGTCTTTCCAGTCAAAGTC 48398 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 48397 TTGACAAAGATTTGCAT 48381 Score = 104 bits (114), Expect = 5e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | || || || ||||| ||||||||||| || || | ||| || || | Sbjct 48017 CAGAGAGAGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 47958 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || || || || ||||| ||||| || || || || || | |||||| | || Sbjct 47957 GTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATT 47898 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || |||||||| ||||| | || || || || |||||||| Sbjct 47897 CAACCTCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 47846 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | |||||||| || || ||||||||||| || || | ||| || || | Sbjct 47320 CAGAGAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 47261 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || |||||||| || ||||| || || || || ||||| || | || || | | Sbjct 47260 GTGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACT 47201 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 | ||||| || || || ||||| || || || || || ||||| || |||| Sbjct 47200 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391953248396