Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq335 84.2 2e-11 >seq2 Length=712398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| ||||||||||| |||| || || || ||||||| ||||| Sbjct 184694 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-AAAGGGTACGGCCGTCCTCGAGCTG 184752 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || || | | ||||||||| || || Sbjct 184753 CTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 184812 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| |||| |||||| ||||| || ||||| || || || Sbjct 184813 GGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGT 184872 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| ||||| Sbjct 184873 AAGGGTCTTGACGAAAATTTGCAT 184896 >seq335 Length=386496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || |||||||||||||| |||| | ||| | || |||| |||||| ||| | | Sbjct 39020 TCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAG 39079 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||||||||||| || || | | |||||||||| || || ||||| | | Sbjct 39080 ATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 39139 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| || || ||| | || ||||| || || || | ||| || ||| Sbjct 39140 TCAATGGTATCGGAGGATTCAACCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACA 39199 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 39200 AAGATCTGCAT 39210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248956442437