Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq46 84.2 1e-11 >seq46 Length=651723 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 295952 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 295893 Query 11520 CTAAT 11524 ||||| Sbjct 295892 CTAAT 295888 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 297713 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 297654 Query 11520 CTAAT 11524 ||||| Sbjct 297653 CTAAT 297649 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 299459 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 299400 Query 11520 CTAAT 11524 ||||| Sbjct 299399 CTAAT 299395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 301151 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 301092 Query 11520 CTAAT 11524 ||||| Sbjct 301091 CTAAT 301087 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 302849 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 302790 Query 11520 CTAAT 11524 ||||| Sbjct 302789 CTAAT 302785 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 304547 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 304488 Query 11520 CTAAT 11524 ||||| Sbjct 304487 CTAAT 304483 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 306245 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 306186 Query 11520 CTAAT 11524 ||||| Sbjct 306185 CTAAT 306181 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||| | ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| Sbjct 307943 CCATACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAG 307884 Query 11520 CTAAT 11524 ||||| Sbjct 307883 CTAAT 307879 Lambda K H 0.641 0.410 0.924 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489807314212