Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq30 116 3e-21 seq335 113 4e-20 seq90 82.4 7e-11 >seq30 Length=118212 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||||||||| || | ||| || ||| | |||| | ||| || ||||| |||||| Sbjct 48349 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCG 48290 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||| || || |||||||| || ||||| | ||| || |||||| Sbjct 48289 GCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCTTGAATCTTGGCCTTG 48230 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||||| || || |||| |||||||| ||||| || || || Sbjct 48229 ACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTC 48170 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 48169 TTGACGAAGATCTGCAT 48153 >seq335 Length=386496 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||||||||| || | ||| || ||| | |||| | ||| || ||||| |||||| Sbjct 158857 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCG 158798 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||| || || |||||||| || ||||| | ||| || |||||| Sbjct 158797 GCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGCCTTG 158738 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||||| || || |||| |||||||| ||||| || || || Sbjct 158737 ACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTC 158678 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 158677 TTGACGAAGATCTGCAT 158661 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || | ||| | ||||||||| ||||| | ||| || || | || ||| | Sbjct 38996 CGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAG--AGAGGGTTCGGC 39053 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||| |||||| ||||||| || | ||||| || || || || ||||| | Sbjct 39054 CATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCT 39113 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || |||||||| | | || || | | || || |||| || | Sbjct 39114 TGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAA 39173 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| | ||| || |||||||||||||| Sbjct 39174 TGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| |||||||| || | |||||| ||| || |||| ||| || ||||| Sbjct 38779 GTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCTTCAAGCTG 38838 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 ||||| | || || | | |||||| || || |||||||| || || || | ||| || Sbjct 38839 CTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTT 38898 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| || | | |||||| | ||||| || | || ||||| |||||||| Sbjct 38899 GGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTCTTTCCAGT 38958 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || ||||||||||| Sbjct 38959 AAGTGTCTTGACGAAGATCTGCAT 38982 >seq90 Length=625778 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| ||||||| | | ||||| || || || || || || ||| Sbjct 499360 TCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTG 499301 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| |||||| | || || || | |||||| Sbjct 499300 TCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATG 499241 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||||||||| Sbjct 499240 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288751209320