Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq46 239 7e-59 seq15 230 4e-56 seq434 224 2e-54 seq325 224 2e-54 seq281 224 2e-54 seq24 190 3e-44 seq147 187 4e-43 seq71 120 5e-23 >seq46 Length=651723 Score = 239 bits (264), Expect = 7e-59 Identities = 211/261 (81%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| |||||||||||||| |||||||||||||| || Sbjct 143583 GCCAAGCGTCACCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCAT 143525 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || ||||||||| ||||||| ||| |||||||||||| Sbjct 143524 TCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTTTGATCTATGAAGAGAC 143465 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | |||||| ||| |||||||| ||| ||| | ||| || || Sbjct 143464 TCGAGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGACGCTGTTACCTACACTGA 143405 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| ||||||| ||| | || || || || Sbjct 143404 GCACGCCAAGAGAAAGACTGTCACCTCGTTGGATGTCGTCTACGCACTTAAGCGACAGGG 143345 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| ||||| ||||| || Sbjct 143344 CCGTACCATTTACGGTTTCGG 143324 Score = 233 bits (258), Expect = 3e-57 Identities = 210/261 (80%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| ||||||||||||||||| Sbjct 113108 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCTAT 113166 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || ||||||||| ||||||| || |||||||||||| Sbjct 113167 CCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTTTAATCTATGAAGAGAC 113226 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| | | ||||||| ||| ||| || ||| || || Sbjct 113227 CCGTGGAGTCCTCAAGGTGTTCCTCGAAAATGTTATCCGTGACGCTGTCACCTACACTGA 113286 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| ||||||| ||| | || || || || Sbjct 113287 GCACGCCAAGAGAAAGACTGTCACCTCGTTGGATGTCGTCTACGCACTTAAGCGACAGGG 113346 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| || || |||||||| Sbjct 113347 CCGTACCATCTACGGTTTTGG 113367 >seq15 Length=140032 Score = 230 bits (254), Expect = 4e-56 Identities = 209/261 (80%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| || Sbjct 116154 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 116096 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || ||||||||| ||||||| ||| |||| ||||||| Sbjct 116095 TCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTTTGATCTACGAAGAGAC 116036 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| ||| |||||| | ||| ||| || ||| || || Sbjct 116035 CCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATTCGTGACGCTGTCACCTACACTGA 115976 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| |||||||||| | || || || || Sbjct 115975 GCACGCCAAGAGAAAGACTGTCACCTCGTTGGATGTCGTCTATGCTCTCAAGCGACAGGG 115916 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| || || |||||||| Sbjct 115915 CCGTACCATCTACGGTTTTGG 115895 Score = 224 bits (248), Expect = 2e-54 Identities = 208/261 (80%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| || Sbjct 89587 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 89645 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || ||||||||| ||||||| || |||| ||||| | Sbjct 89646 CCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAAAC 89705 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| |||||||| |||||| | || || || Sbjct 89706 CCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTTATCCGTGATGCAGTTACGTACACTGA 89765 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| ||||||| ||| | || || || || Sbjct 89766 GCACGCCAAGAGAAAGACTGTCACCTCGTTGGATGTCGTCTACGCACTTAAGCGACAGGG 89825 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| || || |||||||| Sbjct 89826 CCGTACCATCTACGGTTTTGG 89846 >seq434 Length=150676 Score = 224 bits (248), Expect = 2e-54 Identities = 208/261 (80%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| ||||||||||||||||| Sbjct 6816 GCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACCAAGCCAGCTAT 6874 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || || |||||| ||||||| || |||| ||||||| Sbjct 6875 CCGTCGTCTCGCTCGTCGTGGAGGTGTAAAGCGTATCTCTGGTCTGATCTACGAAGAGAC 6934 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| ||| |||||||| ||| ||| || ||| || || Sbjct 6935 CCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGACGCTGTCACCTACACTGA 6994 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| |||| ||||| | || || || || Sbjct 6995 GCACGCCAAGAGAAAGACTGTCACCTCATTGGATGTCGTTTATGCTCTCAAGCGACAGGG 7054 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| || || ||||| || Sbjct 7055 CCGTACCATCTACGGTTTCGG 7075 >seq325 Length=20586 Score = 224 bits (248), Expect = 2e-54 Identities = 208/261 (80%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| ||| || || ||||||||||| ||||||||||||||||| Sbjct 6866 GCCAAGCGTCACCGCAAGAT-TCTGCGTGACAACATCCAAGGTATCACCAAGCCAGCTAT 6924 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || ||||||||| ||||||| || |||| ||||||| Sbjct 6925 CCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGAC 6984 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| ||| |||||||| ||| ||| || ||| || || Sbjct 6985 CCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGACGCTGTCACCTACACTGA 7044 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| |||| ||||| | || || || || Sbjct 7045 GCACGCCAAGAGAAAGACTGTCACCTCATTGGATGTCGTTTATGCTCTCAAGCGACAGGG 7104 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| || || ||||| || Sbjct 7105 CCGTACCATCTACGGTTTCGG 7125 >seq281 Length=28434 Score = 224 bits (248), Expect = 2e-54 Identities = 208/261 (80%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| ||||||||||||||||| Sbjct 17058 GCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACCAAGCCAGCTAT 17116 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || || |||||| ||||||| || |||| ||||||| Sbjct 17117 CCGTCGTCTCGCTCGTCGTGGAGGTGTAAAGCGTATCTCTGGTCTGATCTACGAAGAGAC 17176 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| ||| |||||||| ||| ||| || ||| || || Sbjct 17177 CCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGACGCTGTCACCTACACTGA 17236 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||||| ||||| |||| ||||| | || || || || Sbjct 17237 GCACGCCAAGAGAAAGACTGTCACCTCATTGGATGTCGTTTATGCTCTCAAGCGACAGGG 17296 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| || || ||||| || Sbjct 17297 CCGTACCATCTACGGTTTCGG 17317 >seq24 Length=690343 Score = 190 bits (210), Expect = 3e-44 Identities = 201/262 (77%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || |||||||||||||| | Sbjct 335650 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCAGCCA 335708 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||||||||| || ||||||||| ||||||| || |||| || |||| Sbjct 335709 TCCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGA 335768 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| | |||||| ||| |||||||| ||||||| || ||| || | Sbjct 335769 CCCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGATGCTGTCACCTACACTG 335828 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||||||||| || |||| | || || || | || | || | Sbjct 335829 AGCACGCCAAGAGAAAGACTGTCACATCATTGGACGTTGTGTACGCCCTTAAGAGACAGG 335888 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | || || ||||| || Sbjct 335889 GACGCACCATCTACGGTTTCGG 335910 Score = 187 bits (206), Expect = 4e-43 Identities = 200/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || |||||||||||||| | Sbjct 275303 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCAGCCA 275245 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||||||||| || ||||||||| ||||||| || |||| || |||| Sbjct 275244 TCCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGA 275185 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| | |||||| ||| |||||||| ||| ||| || ||| || | Sbjct 275184 CCCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGACGCTGTCACCTACACTG 275125 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||||||||| || |||| | || || || | || | || | Sbjct 275124 AGCACGCCAAGAGAAAGACTGTCACATCATTGGACGTTGTGTACGCCCTCAAGAGACAGG 275065 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | || || ||||| || Sbjct 275064 GACGCACCATCTACGGTTTCGG 275043 >seq147 Length=57105 Score = 187 bits (206), Expect = 4e-43 Identities = 200/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || |||||||||||||| | Sbjct 26826 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCAGCCA 26768 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||||||||| || ||||||||| ||||||| || |||| || |||| Sbjct 26767 TCCGTCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGA 26708 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| | |||||| ||| |||||||| |||||| || ||| || | Sbjct 26707 CCCGTGGAGTCCTCAAGGTGTTCCTCGAGAACGTTATCCGTGATGCCGTCACCTACACTG 26648 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||||||||| || |||| | || || || | || | || | Sbjct 26647 AGCACGCCAAGAGAAAGACTGTCACATCATTGGACGTTGTGTACGCCCTCAAGAGACAGG 26588 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | || || ||||| || Sbjct 26587 GACGCACCATCTACGGTTTCGG 26566 >seq71 Length=85451 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 |||||||| || || || ||||| ||||| || |||||||| |||||||||||| ||||| Sbjct 49402 GGAATCACAAAACCCGCCATCCGCCGTCTCGCCCGTCGTGGAGGAGTCAAGCGTATCTCT 49343 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 || || |||| ||||||| |||| || | || | ||||||| | |||| ||| Sbjct 49342 GGTCTGATCTACGAAGAGACCCGTGGCGTCCTCAAAACCTTCCTCGAATCCGTCATCATA 49283 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 || ||| || || || ||||| ||||| | |||||||| ||| |||| | || Sbjct 49282 GACGCTGTCACTTACACTGAGCATGCTAAGAGAAAGACTGTGACCAGTTTGGACGTTGTT 49223 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || || || || | | ||||| ||||| || Sbjct 49222 TATGCCCTCAAGCGACAGGGAAGAACTATTTACGGTTTCGG 49182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074800447841