Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq157 156 5e-33 >seq157 Length=558770 Score = 156 bits (172), Expect = 5e-33 Identities = 346/516 (67%), Gaps = 10/516 (2%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| |||||||| ||||| || || || || || || ||||||| ||| || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||||| ||||| || || || || || | || | | ||||| ||||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAA---AGAAAC 322393 Query 33132 CAA---TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33188 ||| ||| || ||||||||||| || || |||||| ||| | |||||||| || Sbjct 322394 CAAAAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAAT 322453 Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 ||||| || || || || || | | ||||||||| |||| || || || | | Sbjct 322454 CAGTTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGAC 322513 Query 33249 AATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 ||| | || || || | | || || | || |||||| | ||| || Sbjct 322514 AATCT-TGTAGACGTATCGACTGTTGGCTTATTCTTCAACAAGCTAAACAAAAGACAAGC 322572 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 || || ||| || ||||||||||| ||| || || || || || || || || || Sbjct 322573 AAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCTGG 322632 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||| | ||||||||| || ||||| || |||||||| || || ||||| ||||| ||||| Sbjct 322633 CATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATTCC 322692 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG---GCGCTGTCATGTATCCA 33485 || || | || || |||| ||| | ||| | | | | ||||| ||||| Sbjct 322693 CTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAGATCCA 322752 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 ||| |||||||||||||||||||| | | ||| || Sbjct 322753 CTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943797150920