Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq38 300 4e-76 seq13 300 4e-76 seq157 123 6e-23 >seq38 Length=108757 Score = 300 bits (332), Expect = 4e-76 Identities = 879/1335 (66%), Gaps = 42/1335 (3%) Strand=Plus/Minus Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 ||| | |||||||| | |||| ||||||||||| || | || ||||| | || || Sbjct 88192 GGACATTCGAATGGAATCATTCCGATGCTTCGTGTCTTCAATAACACTGCTCGCTATGTG 88133 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 || || || || ||||| ||||| |||||||| || | ||||| || || Sbjct 88132 GATCAAGGAGGCAACAAGCGTCCCGGGGCCTTTGCTATCTACTTGGAGCCATGGCACGCA 88073 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||||| ||||| || ||||| ||| ||| || || || ||||||||| || || || Sbjct 88072 GATATCTTTGAATTCCTTGATCTCAAGAAGAATACTGGTAAAGAGGAAAACCGCGCTCGA 88013 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GCA--GGT 363990 || |||||||||| || ||| | | |||| ||||||||||| |||||| ||| ||| Sbjct 88012 GACTTGTTCTATGCTCTCTGGATCTGTGACTTGTTTATGAAGCGTGTGGAGAGCAATGGT 87953 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 | ||||| ||||| || ||| ||| ||||| | || ||||| || Sbjct 87952 GAC---TGGTCTCTCTTCTGTCCAAGTGAAGCGCCAGGGTTGGAAGACTGCTGGGGCGAA 87896 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 | | || || || || ||| |||||| | || ||| ||||| || Sbjct 87895 AAGTTTGAAGCACTTTATGAATCATATGAACGCAAAGGGTTGGCCCGTAAAGTTATCAAG 87836 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||||| || || || || | ||||| || || || || ||| Sbjct 87835 GCTCAGAAGCTTTGGTACGCCATTATTGAGTCTCAAACCGAGACTGGTACCCCATACATG 87776 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||||||| | || ||| ||||||| ||||| ||| || | || || || || Sbjct 87775 TTGTACAAAGATGCCTGTAACAGCAAGTCTAACCAACAGAACTTGGGCACCATCAAGTGC 87716 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 || ||||| || || || || | || ||||| |||| ||||| | ||||| |||||| Sbjct 87715 AGTAACCTTTGCACAGAAATCGTCGAGTACACTTCTCCTGACGAAATCGCCGTCTGTAAC 87656 Query 364291 CTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGATGGTACTTTTGACCACCAGC 364345 ||||| || ||| | ||||| || ||||| | |||| ||||| ||| || Sbjct 87655 CTTGCTTCTATCTCCCTTCCAGCCTTTGTTGTGAACAAGA--CTACTTACGACTTTGAGA 87598 Query 364346 ATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 | || | || || | ||||| || || | ||||| | || |||| || Sbjct 87597 AACTCCGCCAGGTCACTAAAGTCATG--ACCAAGAACTTGAACAAGATCATTGACATTAA 87540 Query 364404 TTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGG 364463 || || || | ||| ||| || || || |||||||| || || || |||||||| Sbjct 87539 TTTCTACCCTGTCATTGAGGCCAAGAACTCAAACATGCGTCACCGACCTATCGGTCTTGG 87480 Query 364464 TGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG-GCATTTGATTCGCCT---- 364518 || || || || || || | ||| | |||||||| | || ||||| || Sbjct 87479 AGTTCAAGGACTTGCCGATGCTTTCA------TCAAGATGCGTCTTCCATTCGACTCCGA 87426 Query 364519 -GACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 | || | || || ||| |||||||||||| ||||| | || || || || Sbjct 87425 AGGAGCGAAAGAGCTGAACAAGAAGATCTTTGAAAACATGTACTACGCTGCCGTGGAGGC 87366 Query 364578 TTCGTGTGA-TTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTT 364636 ||||||||| ||| | |||| | || | ||||| ||||| || || ||| | | Sbjct 87365 TTCGTGTGAGATTGCCGAAAAAGACGGTCCA-TACTCAACTTACGAAGGAAGCCCAATGT 87307 Query 364637 CGCAGGGAAAATTCCAGTTTGATCTATGGAA---TG-TCACGCCATCTGTCCGATGGAAC 364692 | | ||| | || || || || ||||| || | || || | ||| || Sbjct 87306 CAAAAGGACAGTTGCAACCAGACCTTTGGAACATTGATTTGAGCAACTCTGATTTGG-AC 87248 Query 364693 TGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCG 364752 |||||| | || || | || || ||| | ||| || ||||| | | | || Sbjct 87247 TGGGATGCTCTTCGCGCTAAGGTGGCCAAGTACGGTGTCCGAAACTCTTTGTTGATGGCT 87188 Query 364753 CCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTT 364812 || ||||| || || || || | ||||| || || ||||||||||| || ||||||| Sbjct 87187 CCAATGCCAACTGCATCGACATCTCAGATTCTTGGTAACAACGAGTGTTTTGAACCGTAC 87128 Query 364813 ACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTAC 364872 ||||||||| | || | ||||| |||||| | || ||||| | | || ||| | || Sbjct 87127 ACAAGCAATATCTACACTCGCCGTGTTCTTGCGGGTGAATTCCAAATTGTGAATCCGCAC 87068 Query 364873 CTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATC 364932 | | ||||| | |||| | || | ||| |||| |||||||||| ||| || Sbjct 87067 TTGTTGAAGGACTTGACCGAACTTGGTTTATGGAACGACACCATGAAGAACCGTATTATT 87008 Query 364933 GCCGCTAATGGTTCTGTGCAGAACATTCCAG-GAT-TTCCAGAAGATCTGAAGCCTATTT 364990 || | ||||| || || || ||| ||| | | |||||| ||||| ||| ||| | Sbjct 87007 GCTGAGAATGGATCAGTCCAACGCAT--CAGCGCTATTCCAGCTGATCTCAAGGGTATCT 86950 Query 364991 ACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 |||| || || ||||||||||| || | | |||| || ||||| || || || ||| Sbjct 86949 ACAAGACTGTCTGGGAAATTTCTCAAAAG-GTTATCATCGACATGGCTGCTGACCGTGGT 86891 Query 365050 GCTTTTATCTGTCAG 365064 || || ||| || || Sbjct 86890 GCATTCATCGGTAAG 86876 >seq13 Length=692062 Score = 300 bits (332), Expect = 4e-76 Identities = 879/1335 (66%), Gaps = 42/1335 (3%) Strand=Plus/Minus Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 ||| | |||||||| | |||| ||||||||||| || | || ||||| | || || Sbjct 277988 GGACATTCGAATGGAATCATTCCGATGCTTCGTGTCTTCAATAACACTGCTCGCTATGTG 277929 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 || || || || ||||| ||||| |||||||| || | ||||| || || Sbjct 277928 GATCAAGGAGGCAACAAGCGTCCCGGGGCCTTTGCTATCTACTTGGAGCCATGGCACGCA 277869 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||||| ||||| || ||||| ||| ||| || || || ||||||||| || || || Sbjct 277868 GATATCTTTGAATTCCTTGATCTCAAGAAGAATACTGGTAAAGAGGAAAACCGCGCTCGA 277809 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GCA--GGT 363990 || |||||||||| || ||| | | |||| ||||||||||| |||||| ||| ||| Sbjct 277808 GACTTGTTCTATGCTCTCTGGATCTGTGACTTGTTTATGAAGCGTGTGGAGAGCAATGGT 277749 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 | ||||| ||||| || ||| ||| ||||| | || ||||| || Sbjct 277748 GAC---TGGTCTCTCTTCTGTCCAAGTGAAGCGCCAGGGTTGGAAGACTGCTGGGGCGAA 277692 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 | | || || || || ||| |||||| | || ||| ||||| || Sbjct 277691 AAGTTTGAAGCACTTTATGAATCATATGAACGCAAAGGGTTGGCCCGTAAAGTTATCAAG 277632 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||||| || || || || | ||||| || || || || ||| Sbjct 277631 GCTCAGAAGCTTTGGTACGCCATTATTGAGTCTCAAACCGAGACTGGTACCCCATACATG 277572 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||||||| | || ||| ||||||| ||||| ||| || | || || || || Sbjct 277571 TTGTACAAAGATGCCTGTAACAGCAAGTCTAACCAACAGAACTTGGGCACCATCAAGTGC 277512 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 || ||||| || || || || | || ||||| |||| ||||| | ||||| |||||| Sbjct 277511 AGTAACCTTTGCACAGAAATCGTCGAGTACACTTCTCCTGACGAAATCGCCGTCTGTAAC 277452 Query 364291 CTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGATGGTACTTTTGACCACCAGC 364345 ||||| || ||| | ||||| || ||||| | |||| ||||| ||| || Sbjct 277451 CTTGCTTCTATCTCCCTTCCAGCCTTTGTTGTGAACAAGA--CTACTTACGACTTTGAGA 277394 Query 364346 ATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 | || | || || | ||||| || || | ||||| | || |||| || Sbjct 277393 AACTCCGCCAGGTCACTAAAGTCATG--ACCAAGAACTTGAACAAGATCATTGACATTAA 277336 Query 364404 TTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGG 364463 || || || | ||| ||| || || || |||||||| || || || |||||||| Sbjct 277335 TTTCTACCCTGTCATTGAGGCCAAGAACTCAAACATGCGTCACCGACCTATCGGTCTTGG 277276 Query 364464 TGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG-GCATTTGATTCGCCT---- 364518 || || || || || || | ||| | |||||||| | || ||||| || Sbjct 277275 AGTTCAAGGACTTGCCGATGCTTTCA------TCAAGATGCGTCTTCCATTCGACTCCGA 277222 Query 364519 -GACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 | || | || || ||| |||||||||||| ||||| | || || || || Sbjct 277221 AGGAGCGAAAGAGCTGAACAAGAAGATCTTTGAAAACATGTACTACGCTGCCGTGGAGGC 277162 Query 364578 TTCGTGTGA-TTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTT 364636 ||||||||| ||| | |||| | || | ||||| ||||| || || ||| | | Sbjct 277161 TTCGTGTGAGATTGCCGAAAAAGACGGTCCA-TACTCAACTTACGAAGGAAGCCCAATGT 277103 Query 364637 CGCAGGGAAAATTCCAGTTTGATCTATGGAA---TG-TCACGCCATCTGTCCGATGGAAC 364692 | | ||| | || || || || ||||| || | || || | ||| || Sbjct 277102 CAAAAGGACAGTTGCAACCAGACCTTTGGAACATTGATTTGAGCAACTCTGATTTGG-AC 277044 Query 364693 TGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCG 364752 |||||| | || || | || || ||| | ||| || ||||| | | | || Sbjct 277043 TGGGATGCTCTTCGCGCTAAGGTGGCCAAGTACGGTGTCCGAAACTCTTTGTTGATGGCT 276984 Query 364753 CCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTT 364812 || ||||| || || || || | ||||| || || ||||||||||| || ||||||| Sbjct 276983 CCAATGCCAACTGCATCGACATCTCAGATTCTTGGTAACAACGAGTGTTTTGAACCGTAC 276924 Query 364813 ACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTAC 364872 ||||||||| | || | ||||| |||||| | || ||||| | | || ||| | || Sbjct 276923 ACAAGCAATATCTACACTCGCCGTGTTCTTGCGGGTGAATTCCAAATTGTGAATCCGCAC 276864 Query 364873 CTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATC 364932 | | ||||| | |||| | || | ||| |||| |||||||||| ||| || Sbjct 276863 TTGTTGAAGGACTTGACCGAACTTGGTTTATGGAACGACACCATGAAGAACCGTATTATT 276804 Query 364933 GCCGCTAATGGTTCTGTGCAGAACATTCCAG-GAT-TTCCAGAAGATCTGAAGCCTATTT 364990 || | ||||| || || || ||| ||| | | |||||| ||||| ||| ||| | Sbjct 276803 GCTGAGAATGGATCAGTCCAACGCAT--CAGCGCTATTCCAGCTGATCTCAAGGGTATCT 276746 Query 364991 ACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 |||| || || ||||||||||| || | | |||| || ||||| || || || ||| Sbjct 276745 ACAAGACTGTCTGGGAAATTTCTCAAAAG-GTTATCATCGACATGGCTGCTGACCGTGGT 276687 Query 365050 GCTTTTATCTGTCAG 365064 || || ||| || || Sbjct 276686 GCATTCATCGGTAAG 276672 >seq157 Length=558770 Score = 123 bits (136), Expect = 6e-23 Identities = 348/525 (66%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 22424 TTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGT--- 22479 ||| || |||| || ||||| |||||||| || || ||||| | ||| | || Sbjct 322790 TTCCATGTATTAGAAAGAAGGCCGATTGGGCTCTCAAGTGGAT---CTCTGACAAGTCTT 322734 Query 22480 --TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAG 22537 || ||||| ||||| ||| |||| || || || || || || |||||||| ||||| Sbjct 322733 CCTCCTTCGCAGAACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTT 322674 Query 22538 CATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAA 22597 | ||| | | ||||| ||||| || || |||| | ||||| || || || || || | Sbjct 322673 CCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCTTACATTCTCTA 322614 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 ||||| | ||| | |||| ||||| || || || || ||||| ||| | | | | | Sbjct 322613 ATGAGCTCATTTCCAGAGACGAGGGCCTCCACACTGACTTTGCTTGTCTTTTGTTTAGC- 322555 Query 22658 ATCATATCATTCATAAACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTT 22716 | | | | |||| | || || || | ||| ||| | | || || || Sbjct 322554 -TTGT-TGAAGAATAAGCCAACAGTCGATACGTCTACAAGATTGTCTCTGAA--GCTGTC 322499 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || ||||| | |||| | || || | || || | || ||||| || || | Sbjct 322498 GAGCTTGAGCAAGAATTTTTGATTGACGCCCTCCCTGTGAAACTGATTGGAATGAACTCT 322439 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || | ||||| || ||| |||| || ||||| | || || |||| | || | | Sbjct 322438 GACTTGATGAGCCAGTACATTGAATTCGTCGCAGACAGACTTTTGGTTTCTTTGGGCTGT 322379 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTG-AAGG 22895 | |||| || ||||||| || || ||||| | ||||| || || || |||| |||| Sbjct 322378 CCTAAGCTCTACAACGTCGAGAACCCCTTTGACTTCATGGATCTCATCTC-CTTGCAAGG 322320 Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||||||||| ||||| || || | ||| || |||||||| ||||| Sbjct 322319 AAAGACCAACTTCTTTGAGAAGAAAGTGGGAGAATACCAGAAAGC 322275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346302441734