Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq335 93.3 4e-14 seq30 89.7 4e-13 >seq335 Length=386496 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| ||||| |||||||| | ||| ||||| | Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | || || || || ||||| ||||| |||| || ||| Sbjct 158186 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 158245 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| || || || || || ||||||| | ||| | | || || ||| Sbjct 158246 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 158305 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||||||| | || |||| Sbjct 158306 ATTCAAAAGGAGTCTACTCTTCACTTGGT 158334 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || || ||||| ||||||||| | ||| ||||| | Sbjct 38982 ATGCAGATCTTCGTCAAGACACTTACTGGAAAGACCATTACCTTGGAAGTCGAGTCATCC 38923 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | || || || ||| ||||| || || | || ||| ||| Sbjct 38922 GACACTATTGAAAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAG 38863 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| || || || || | ||||||| || || |||| |||||| Sbjct 38862 CAACGTCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGCACTTTGTCCGACTATAAC 38803 Query 115466 ATTCAAAAAGAGTCTACT 115483 ||||| || || || ||| Sbjct 38802 ATTCAGAAGGAATCCACT 38785 >seq30 Length=118212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || ||||| ||||| |||||||| | ||| ||||| | Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | || || || || ||||| ||||| |||| || ||| Sbjct 47678 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 47737 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| || || || || || ||||||| | ||| | | || || ||| Sbjct 47738 CAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 47797 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||||||| | || |||| Sbjct 47798 ATTCAAAAGGAGTCTACTCTTCACTTGGT 47826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341734644440