Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq38 205 1e-47 seq13 205 1e-47 seq157 143 3e-29 >seq38 Length=108757 Score = 205 bits (226), Expect = 1e-47 Identities = 878/1364 (64%), Gaps = 33/1364 (2%) Strand=Plus/Plus Query 61995 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 ||||||| || || | ||| |||||||| | || || |||||| | ||||||||| | Sbjct 86881 CGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGA 86940 Query 62055 TAGTTTTATAAACTCGCTTAATATCTTCTGGAA--GGTTTGTATTC--TGAATGGATCCA 62110 ||| || || | | ||| | ||| |||||| | || || | || | |||||| Sbjct 86941 CAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTG-ATGCGTTGGACTGATCCA 86999 Query 62111 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 62170 || || ||||| | ||||| || || |||||||| ||||| || | Sbjct 87000 TTCTCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCC 87059 Query 62171 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62230 | | | |||||||| || | ||| ||||| || | | || | |||||||| ||| Sbjct 87060 TTCAACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATA 87119 Query 62231 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62290 || || || |||||||| | | |||| || || || | ||| |||| || |||||||| Sbjct 87120 TTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTT 87179 Query 62291 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 62350 ||||| || |||| ||| ||| |||| | |||||| | | ||| | ||| Sbjct 87180 GGCATTGGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGA 87239 Query 62351 GGTTCCCAATTCCAAAGATCCGACG-GTACAA--CNNNNNNNNNNNNNNNTTGTAGAATA 62407 | ||||| | ||||| || || | ||| | | || | | | Sbjct 87240 GCATCCCAGT-CCAAA--TCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCA-A 87295 Query 62408 CCGT--TACTGGCGTACGA--TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 | || | || | | | |||| | || || |||||| || || || || || | Sbjct 87296 CTGTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAAT 87355 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 ||||| ||||| | ||| |||| || ||| |||| ||||||||||| || || || Sbjct 87356 CTCACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTC 87415 Query 62524 TTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 62583 || |||| | | || |||||| | | || || || || || | |||||| Sbjct 87416 TTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTG 87475 Query 62584 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62643 ||| |||| ||||||||||| || | | | || ||| | | || || | ||| || Sbjct 87476 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 87535 Query 62644 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 62703 ||||||| || || || || || | || || || ||||| || | || Sbjct 87536 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 87595 Query 62704 TTTGAGAAAATC--AAATCGCCCATCTATTACAAACATG--TTCAATGCA-ACAGATGCC 62758 ||| ||| || || | | | | | | |||| | | | || | | | ||| || Sbjct 87596 TTTCTCAAAGTCGTAAGTAGTCT-TGT-TCACAACAAAGGCTGGAAGGGAGATAGAAGCA 87653 Query 62759 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 62818 || ||||| ||||| | || | || | | || | | || || |||||||| ||| Sbjct 87654 AGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTA 87713 Query 62819 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 62878 || ||||||||||| || || || ||||| ||| ||| ||||||| ||||| || || Sbjct 87714 CTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTAC 87773 Query 62879 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCG 62937 | ||| |||| |||||||| || | ||||| || ||||| || | ||| | | || | Sbjct 87774 AACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCT-G 87832 Query 62938 AGCCTTTATTA-TAGATTTG-TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCG 62995 |||||| || | | | | | | |||| | ||| ||| | ||| | | ||| Sbjct 87833 AGCCTTGATAACTTTACGGGCCAACCCTTT--GCGTTCATATGATTCATAAAGTGCTTCA 87890 Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 |||| || ||||| | |||| || || |||| ||||| | | ||||| Sbjct 87891 AACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAG 87950 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 63114 || || | || ||| || |||||||| | ||| ||||| ||||| ||| || | Sbjct 87951 TCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC-ATAGAACAA 88009 Query 63115 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63174 |||| | | | |||||| || || |||||||| || ||||| ||||| | | || Sbjct 88010 GTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGAT 88069 Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63234 ||| | ||||| || |||||||| || || | | || || || ||||| ||||| || Sbjct 88070 ATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTG 88129 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT-GGATG 63293 ||| | || | ||| |||||||| | || | | ||| ||||| || ||||| | ||| Sbjct 88130 ATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATG 88189 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337 | || ||||| || | || || || ||||||||| ||| Sbjct 88190 T-CCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCTTA 88232 >seq13 Length=692062 Score = 205 bits (226), Expect = 1e-47 Identities = 878/1364 (64%), Gaps = 33/1364 (2%) Strand=Plus/Plus Query 61995 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 ||||||| || || | ||| |||||||| | || || |||||| | ||||||||| | Sbjct 276677 CGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGA 276736 Query 62055 TAGTTTTATAAACTCGCTTAATATCTTCTGGAA--GGTTTGTATTC--TGAATGGATCCA 62110 ||| || || | | ||| | ||| |||||| | || || | || | |||||| Sbjct 276737 CAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTG-ATGCGTTGGACTGATCCA 276795 Query 62111 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 62170 || || ||||| | ||||| || || |||||||| ||||| || | Sbjct 276796 TTCTCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCC 276855 Query 62171 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62230 | | | |||||||| || | ||| ||||| || | | || | |||||||| ||| Sbjct 276856 TTCAACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATA 276915 Query 62231 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62290 || || || |||||||| | | |||| || || || | ||| |||| || |||||||| Sbjct 276916 TTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTT 276975 Query 62291 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 62350 ||||| || |||| ||| ||| |||| | |||||| | | ||| | ||| Sbjct 276976 GGCATTGGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGA 277035 Query 62351 GGTTCCCAATTCCAAAGATCCGACG-GTACAA--CNNNNNNNNNNNNNNNTTGTAGAATA 62407 | ||||| | ||||| || || | ||| | | || | | | Sbjct 277036 GCATCCCAGT-CCAAA--TCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCA-A 277091 Query 62408 CCGT--TACTGGCGTACGA--TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 | || | || | | | |||| | || || |||||| || || || || || | Sbjct 277092 CTGTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAAT 277151 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 ||||| ||||| | ||| |||| || ||| |||| ||||||||||| || || || Sbjct 277152 CTCACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTC 277211 Query 62524 TTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 62583 || |||| | | || |||||| | | || || || || || | |||||| Sbjct 277212 TTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTG 277271 Query 62584 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62643 ||| |||| ||||||||||| || | | | || ||| | | || || | ||| || Sbjct 277272 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 277331 Query 62644 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 62703 ||||||| || || || || || | || || || ||||| || | || Sbjct 277332 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 277391 Query 62704 TTTGAGAAAATC--AAATCGCCCATCTATTACAAACATG--TTCAATGCA-ACAGATGCC 62758 ||| ||| || || | | | | | | |||| | | | || | | | ||| || Sbjct 277392 TTTCTCAAAGTCGTAAGTAGTCT-TGT-TCACAACAAAGGCTGGAAGGGAGATAGAAGCA 277449 Query 62759 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 62818 || ||||| ||||| | || | || | | || | | || || |||||||| ||| Sbjct 277450 AGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTA 277509 Query 62819 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 62878 || ||||||||||| || || || ||||| ||| ||| ||||||| ||||| || || Sbjct 277510 CTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTAC 277569 Query 62879 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCG 62937 | ||| |||| |||||||| || | ||||| || ||||| || | ||| | | || | Sbjct 277570 AACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCT-G 277628 Query 62938 AGCCTTTATTA-TAGATTTG-TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCG 62995 |||||| || | | | | | | |||| | ||| ||| | ||| | | ||| Sbjct 277629 AGCCTTGATAACTTTACGGGCCAACCCTTT--GCGTTCATATGATTCATAAAGTGCTTCA 277686 Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 |||| || ||||| | |||| || || |||| ||||| | | ||||| Sbjct 277687 AACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAG 277746 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 63114 || || | || ||| || |||||||| | ||| ||||| ||||| ||| || | Sbjct 277747 TCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC-ATAGAACAA 277805 Query 63115 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63174 |||| | | | |||||| || || |||||||| || ||||| ||||| | | || Sbjct 277806 GTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGAT 277865 Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63234 ||| | ||||| || |||||||| || || | | || || || ||||| ||||| || Sbjct 277866 ATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTG 277925 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT-GGATG 63293 ||| | || | ||| |||||||| | || | | ||| ||||| || ||||| | ||| Sbjct 277926 ATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATG 277985 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337 | || ||||| || | || || || ||||||||| ||| Sbjct 277986 T-CCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCTTA 278028 >seq157 Length=558770 Score = 143 bits (158), Expect = 3e-29 Identities = 348/524 (66%), Gaps = 26/524 (5%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| |||||||| ||||| || || || || || || || |||| || || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||||| || || || || || || || | || | | ||||| ||||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAA---AGAAAC 322393 Query 32489 CAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 32545 ||| ||| |||||||| ||||| || || |||||| ||| | |||||||| || Sbjct 322394 CAAAAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAAT 322453 Query 32546 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 ||||| || || || || || | | ||||||||| |||| ||| || || | | Sbjct 322454 CAGTTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGAC 322513 Query 32606 AAT-----AGATCTT---ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 32657 ||| ||| | |||||| | | || | ||| || |||||| Sbjct 322514 AATCTTGTAGACGTATCGACTGTTGGCTTATTC------TTCAACAAGC---TAAACAAA 322564 Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 | ||| || || || ||| || ||||||||||| ||| | || || || || || Sbjct 322565 AGACAAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTA 322624 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 || || ||||| | ||||||||| || ||||| || ||||| ||||| || ||||| ||| Sbjct 322625 AGGCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAG 322684 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG---GCGCTGTCA 32834 |||||||| || || | || || |||| ||| | ||| | | | | ||||| Sbjct 322685 AAAATTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCA 322744 Query 32835 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 |||||||| |||||||||||||||||||| | | ||| || Sbjct 322745 GAGATCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628538785200