Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq335 123 2e-23 seq30 104 2e-17 seq90 93.3 4e-14 seq2 87.8 2e-12 >seq335 Length=386496 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||| || ||||||| | ||||| ||||||||| Sbjct 38754 ATGCAAATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTTTGGAAGTTGAGTCGTCT 38695 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| ||||| || ||||||||||| Sbjct 38694 GATACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 38635 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || ||| | || |||| || || | |||||||| Sbjct 38634 CAGCGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCCTTTCTGATTACAAC 38575 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 38574 ATCCAGAAGGAGTCCACTCTTCA 38552 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||| || | ||||| ||||| || Sbjct 38982 ATGCAGATCTTCGTCAAGACACTTACTGGAAAGACCATTACCTTGGAAGTCGAGTCATCC 38923 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || ||||| | || | ||| || || || || |||||||||||||| Sbjct 38922 GACACTATTGAAAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGTATTCCACCTGACCA 38864 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || || || || | ||||||| ||||||| || ||| || || Sbjct 38863 GCAACGTCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGCACTTTGTCCGACTATAA 38804 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || |||||||| || || Sbjct 38803 CATTCAGAAGGAATCCACTCTTCA 38780 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || |||| || | || || || || || Sbjct 39210 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTCTTGAGGTTGAATCCTCC 39151 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 39150 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCTGACCAG 39091 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || || ||||||| || || | || ||||| Sbjct 39090 CAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGAACCCTCTCTGACTACAAC 39031 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 |||||||||||||| || || || Sbjct 39030 ATTCAAAAAGAATCTACTCTCCA 39008 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 || ||||||| || ||||| || | ||||| || ||||||| |||| || ||||| | Sbjct 157656 CAGTGCAAATCTTCGTAAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCT 157715 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||||||| | ||| |||||| ||||| ||||| || ||||| |||| Sbjct 157716 CTGACACTATCGAGAATGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGACC 157775 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||||| | || ||||| || || || | ||||| Sbjct 157776 AACAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGA 157812 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||||| ||| Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| ||||| || || ||||||||||| Sbjct 158721 GACACCATCGAAAATGTCA---AGGCCAAGATTCAA-GACAAGGAGGGTATTCCACCTGA 158776 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || ||||| || || | ||||||| |||||| | ||| || Sbjct 158777 CCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTA 158836 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || ||||| || || || Sbjct 158837 CAACATCCAGAAGGAATCTACCCTTCA 158863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 || ||||||| || ||||| || | ||||| || | ||||| |||| || ||||| | Sbjct 39564 CAGTGCAAATCTTCGTAAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTCGAGTCCT 39505 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||| |||||| | ||| || ||| ||||| || || ||||||||||||| Sbjct 39504 CTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCTGACC 39445 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 | ||||| | || ||||| || || || | ||||| | ||| ||| Sbjct 39444 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGTCGTACT 39398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| |||| || || || ||| Sbjct 158354 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTTGAATCCTCT 158413 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| ||||| |||||||| ||||| Sbjct 158414 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 158473 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| | || ||||| || || ||| | ||||||| || ||| Sbjct 158474 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGATGGCCGTACT 158518 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | ||||| || || ||| Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| || || ||||| |||||||| ||||| Sbjct 158949 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 159008 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || || ||||| | || || | || ||||| Sbjct 159009 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 159068 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 159069 ATTCAGAAGGAGTCTACCCTCCA 159091 >seq30 Length=118212 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 || ||||||| ||||| ||||| | ||||| || ||||||| |||| || ||||| | Sbjct 47147 CAGTGCAAATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCT 47206 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||||||| | ||| |||||| ||||| ||||| || ||||| |||| Sbjct 47207 CTGACACTATCGAGAATGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGACC 47266 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 | ||||| | || ||||| || || || | ||||| Sbjct 47267 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGA 47303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | ||||| | ||||| || || ||| Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| || || ||||| |||||||| ||||| Sbjct 48441 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 48500 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || || ||||| | || || | || ||||| Sbjct 48501 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 48560 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 48561 ATTCAGAAGGAGTCTACCCTCCA 48583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| |||| || || || ||| Sbjct 47846 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTTGAATCCTCT 47905 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || |||||||| ||||| Sbjct 47906 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 47965 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| | || ||||| || || ||| | || |||| || ||| Sbjct 47966 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACT 48010 >seq90 Length=625778 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || ||||| ||||||| |||| |||||||| || Sbjct 499205 AATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 499264 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| || ||| ||||| || || || ||||||||||| Sbjct 499265 CGACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCA 499324 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || | || || | ||||| | || ||||| Sbjct 499325 GCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACAA 499384 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 499385 CATCCAGAAGGAGTCGACCCTCCA 499408 >seq2 Length=712398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||||| ||||||| || || ||||| | || || || ||||||| |||| || |||| Sbjct 184900 GAACA-TGCAAATTTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAGT 184842 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || ||||| |||||| | ||| || ||| ||||| || || || ||||||| Sbjct 184841 CTTCCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTG 184782 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||||| | || || ||||| || || | || || | || || | || | Sbjct 184781 ACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTTCTGACT 184722 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 |||| ||||| || || ||||| || || Sbjct 184721 ACAACATTCAGAAGGAGTCCACCCTCCA 184694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325692122155