Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq157 145 8e-30 >seq157 Length=558770 Score = 145 bits (160), Expect = 8e-30 Identities = 350/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| |||||||| || ||||| || |||||||| || |||||||||| ||| || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 92862 ATTCACTA-GTGATTGGA-TTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 || || | || | || |||| | |||| || ||| || | ||| ||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAAAGAAACCAA 322396 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | ||| || || || ||||| |||||||| |||||| ||| | |||||||| | || Sbjct 322397 AAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAATCAG 322456 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 ||||| || ||||| |||| || |||| ||| | | || ||||| | || Sbjct 322457 TTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGACAAT 322516 Query 93040 -TTCTATTAC---TCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 || || || || ||| || | | || || || | ||| ||| | || | Sbjct 322517 CTTGTAG-ACGTATCGACTGTTGGCTTATTCTTCAACAAGCTAA----ACAAAAGACAAG 322571 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 ||||||| || || | || ||||||| || || | |||||| |||||| | |||| Sbjct 322572 CAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCTG 322631 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || || || ||||||||||| || || |||||||| |||||| || || || | Sbjct 322632 GCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATTC 322691 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT----G 93271 | |||||| | || || || |||| ||||| || || | |||| ||| | | Sbjct 322692 CCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAA---GGAGGAA-GACTTGTCAGAG 322747 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||||| || | |||||||||||| || || ||||||| || Sbjct 322748 ATCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Score = 132 bits (146), Expect = 5e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 93419 TGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACG 93478 ||||| || ||||||||||| ||||| | ||||| || || | || |||||||| || Sbjct 323025 TGGAAGCCATAGAAACATCTCGCTTCTGGAATCTGAACATCATTGGAGAATCTCTCAACA 323084 Query 93479 AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAA 93538 || || ||||| || || || || || || || || || || | | || | ||| Sbjct 323085 AGGTTCTCATTCACGATGCCGTCCGAAGCAGCGAAGAAGGCAAGGACGTGGGAAACAAAG 323144 Query 93539 TGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG-ATCTTTTGAAAGATCGACTTC 93597 |||||| ||||| | ||||| ||||| ||| ||| |||||| || | || ||||| Sbjct 323145 AATTTCTCGTCATCACTGAGCTTCTCCCAGTCGC-TAGCATCTTTGGACAAGTCTACTTC 323203 Query 93598 TTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 ||| |||||||| || |||||||||||||| |||||||| | ||| Sbjct 323204 TTCAACAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCA 323248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857758147880