Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq335 145 6e-30 seq30 122 7e-23 seq2 111 1e-19 seq90 105 6e-18 seq38 82.4 6e-11 seq13 82.4 6e-11 >seq335 Length=386496 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || | |||||||| || ||| || || Sbjct 39210 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTCTTGAGGTTGAATCCTCC 39151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || || |||||||| || || ||||| || || Sbjct 39150 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCTGACCAG 39091 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || ||||| || ||| ||| ||| |||| || |||||| Sbjct 39090 CAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGAACCCTCTCTGACTACAAC 39031 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | || | |||||||| | || || ||| Sbjct 39030 ATTCAAAAAGAATCTACTCTCCACCTTGTTTTGCGTCTCCGTGGTGGT 38983 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||||||||| || || | | Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||||||||||||||| || || Sbjct 158721 GACACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 158780 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| | || ||| |||||| ||||||| |||||| Sbjct 158781 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 158840 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 158841 ATCCAGAAGGAATCTACC 158858 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || || || ||||| | ||||| ||| || | Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||| || ||||||||||| || Sbjct 158949 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 159008 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||||| || || ||| ||| | || || |||||| Sbjct 159009 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 159068 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || | || ||||| | || ||||| Sbjct 159069 ATTCAGAAGGAGTCTACCCTCCACCTTGTCTTGCGTCTTCGTGGAGG 159115 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || ||||| | ||||| || | | Sbjct 38754 ATGCAAATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTTTGGAAGTTGAGTCGTCT 38695 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| || || ||||| || || Sbjct 38694 GATACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 38635 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | |||||| ||| ||| | || ||||||||| Sbjct 38634 CAGCGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCCTTTCTGATTACAAC 38575 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || ||||| | || | || ||||| Sbjct 38574 ATCCAGAAGGAGTCCACTCTTCACCTCGTCTTGCG 38540 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||||||||||||||| || || ||||||||||| || || || || Sbjct 38898 AAGATTCAGGATAAGGAGGGTATTCCACCTGACCAGCAACGTCTTATTTTCGCTGGAAAG 38839 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||| | ||||| || |||||||| || |||||||| | || Sbjct 38838 CAGCTTGAAGATGGTCGCACTTTGTCCGACTATAACATTCAGAAGGAATCCACTCTTCAC 38779 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | || | || |||||| Sbjct 38778 CTTGTTCTCCGTCTCCGTGGAGGT 38755 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| || || ||||| | ||||| || || |||| || || || || || | | Sbjct 39561 TGCAAATCTTCGTAAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTCGAGTCCTCTG 39502 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | || || |||| || || ||||||||||||||||||||||| || || | Sbjct 39501 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCTGACCAGC 39442 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 | ||||| || ||||| || || ||| | || || Sbjct 39441 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGA 39408 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | ||| | ||||| || | || Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || || ||||| || || ||||| || || Sbjct 158186 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 158245 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||||| || ||| ||||||| |||| || |||||| Sbjct 158246 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 158305 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 158306 ATTCAAAAGGAGTCTAC 158322 >seq30 Length=118212 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || ||||| | ||||| ||| || | Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||| || ||||||||||| || Sbjct 48441 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 48500 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||||| || || ||| ||| | || || |||||| Sbjct 48501 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 48560 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || | || ||||| | || ||||| Sbjct 48561 ATTCAGAAGGAGTCTACCCTCCACCTTGTCTTGCGTCTTCGTGGAGG 48607 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||||||||| || || | | Sbjct 48153 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 48212 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || ||||||||||||||||||||||| || || || Sbjct 48213 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCAG 48272 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| | || ||| |||||| ||||||| |||||| Sbjct 48273 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 48332 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 48333 ATCCAGAAGGAATCTACC 48350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| || || || || |||| || || || ||| || | Sbjct 47846 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTTGAATCCTCT 47905 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || |||||||||||||||||||| || || Sbjct 47906 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 47965 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 || ||||| || ||||| || || || | |||||| ||| || |||| Sbjct 47966 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACTCTCTC 48015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | ||| | ||||| || | || Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || || ||||| || || ||||| || || Sbjct 47678 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 47737 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||||| || ||| ||||||| |||| || |||||| Sbjct 47738 CAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 47797 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 47798 ATTCAAAAGGAGTCTAC 47814 >seq2 Length=712398 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || || | || || || || |||| || || || || | Sbjct 184899 AACATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAGTCT 184840 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || | |||| || || || ||||||||||| || ||||| || Sbjct 184839 TCCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGAC 184780 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | ||||| ||| ||| | || || ||| Sbjct 184779 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTTCTGACTAC 184720 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || |||||| | || | || ||||| | || |||||| Sbjct 184719 AACATTCAGAAGGAGTCCACCCTCCACCTTGTCTTGCGTCTCCGTGGAGGT 184669 >seq90 Length=625778 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| | || Sbjct 499206 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 499265 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| || ||||| || || Sbjct 499266 GACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAG 499325 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||| | ||||| ||||||| | || || |||||| Sbjct 499326 CAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACAAC 499385 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || | || ||||| | || |||||| Sbjct 499386 ATCCAGAAGGAGTCGACCCTCCACCTCGTCTTGCGTCTCCGTGGAGGT 499433 >seq38 Length=108757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 129709 TTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTA 129768 || |||||||| |||||| | |||||||||| ||||| | ||| | ||||| Sbjct 87657 TTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTACTG 87716 Query 129769 TTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATC 129828 || ||||||||||| | || ||| ||| || |||| || ||||||||||||| | Sbjct 87717 CACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACAAC 87776 Query 129829 ATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 ||||| || || || || ||| ||| | || | ||||| Sbjct 87777 ATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGG 87816 >seq13 Length=692062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 129709 TTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTA 129768 || |||||||| |||||| | |||||||||| ||||| | ||| | ||||| Sbjct 277453 TTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTACTG 277512 Query 129769 TTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATC 129828 || ||||||||||| | || ||| ||| || |||| || ||||||||||||| | Sbjct 277513 CACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACAAC 277572 Query 129829 ATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 ||||| || || || || ||| ||| | || | ||||| Sbjct 277573 ATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGG 277612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725764554905