Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq413 100 6e-16 seq155 96.9 7e-15 seq2 96.9 7e-15 seq1 96.9 7e-15 seq157 84.2 4e-11 >seq413 Length=198394 Score = 100 bits (110), Expect = 6e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 || ||||| || ||||||||| | ||||| ||| ||||||| || | | |||| | Sbjct 100880 AACGGTGCTGGAAAGTCTACCATGATCAAGGTCTTGACTGGAGA-AGTCGTTCCACAAAC 100822 Query 280245 GGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 || || |||||||| || ||| || || || |||||||| || ||||||||||| Sbjct 100821 CGGAGATGTCTGGAAGCACCCTAACGCCCGTATCGCCTACGTCGCCCAACACGCTTTCCA 100762 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 |||||| || ||| |||||| ||| |||||| | ||||||| ||||| || || Sbjct 100761 CCACATTGAAGCTCACTTGGACAAGACCCCTAACGAGTACATTCGTTGGCGTTACGC 100705 Score = 93.3 bits (102), Expect = 9e-14 Identities = 158/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| || || ||||| | ||||||| || || | | || |||||||| |||||| Sbjct 100340 GGTCTTGAGCCAGAGTTCGCTACTCACTACCGTATGAGTGCCCTCTCTGGAGGACAGAAG 100281 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | ||||| | || || || ||| | || || ||| | || |||| |||||| Sbjct 100280 GTCAAGGTCGTCATGGCCGCTGCCCTCTGGAACCAGCCACACATTCTCATTCTTGACGAG 100221 Query 280800 CCTACCAACTATCTGGACCGCGAGAGC-CTGGGCGCTCTGAGTGC---TGCTCTGGACAC 280855 || |||||||| ||||||| || ||| |||| ||||| ||| || | || Sbjct 100220 CCAACCAACTACTTGGACCGTGA-AGCTTTGGGAGCTCT---TGCCAACGCCATTGAAGG 100165 Query 280856 ATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAGAATTTGT 280900 ||| || || || ||||| ||||||| |||| | | || || || Sbjct 100164 ATTCGGTGGAGGTGTCGTTATCATTTCCCACAACTCTGAGTTCGT 100120 >seq155 Length=55617 Score = 96.9 bits (106), Expect = 7e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 |||||||||||||| ||| || ||||||||||| || || ||| |||| | Sbjct 38685 AATGGTGCGGGTAAAAGTACACTCATCAAAGTCCTTTTGGGTGAAGTTCAG-CCACAGTC 38627 Query 280245 GGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 || | || ||||| || || ||| |||| | | |||||| |||||||| |||||||| Sbjct 38626 TGGAACTGTGTGGAAACACCCAAACTTGCGTGTTGGTTACGTAGCTCAGCATGCTTTCCA 38567 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTAT 280358 |||| | || | || || || |||||||| ||| ||||| | || ||||| ||| Sbjct 38566 CCACTTGGAACAACATCTTGATATGACTCCAAACAAATACTTGCAATGGCGTTAT 38512 >seq2 Length=712398 Score = 96.9 bits (106), Expect = 7e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 |||||||||||||| ||| || ||||||||||| || || ||| |||| | Sbjct 388185 AATGGTGCGGGTAAAAGTACACTCATCAAAGTCCTTTTGGGTGAAGTTCAG-CCACAGTC 388127 Query 280245 GGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 || | || ||||| || || ||| |||| | | |||||| |||||||| |||||||| Sbjct 388126 TGGAACTGTGTGGAAACACCCAAACTTGCGTGTTGGTTACGTAGCTCAGCATGCTTTCCA 388067 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTAT 280358 |||| | || | || || || |||||||| ||| ||||| | || ||||| ||| Sbjct 388066 CCACTTGGAACAACATCTTGATATGACTCCAAACAAATACTTGCAATGGCGTTAT 388012 >seq1 Length=1023498 Score = 96.9 bits (106), Expect = 7e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 || ||||| || ||||||||| | ||||| || ||||||| || | | |||| | Sbjct 421324 AACGGTGCTGGAAAGTCTACCATGATCAAGGTTTTGACTGGAGA-AGTCGTTCCACAAAC 421266 Query 280245 GGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 || || |||||||| || ||| || || || |||||||| || ||||||||||| Sbjct 421265 CGGAGATGTCTGGAAGCACCCTAACGCCCGTATCGCCTACGTCGCCCAACACGCTTTCCA 421206 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 |||||| || ||| |||||| ||| |||||| | ||||||| ||||| || || Sbjct 421205 CCACATTGAAGCTCACTTGGACAAGACCCCTAACGAGTACATTCGTTGGCGTTACGC 421149 Score = 93.3 bits (102), Expect = 9e-14 Identities = 158/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| || || ||||| | ||||||| || || | | || |||||||| |||||| Sbjct 420784 GGTCTTGAGCCAGAGTTCGCTACTCACTACCGTATGAGTGCCCTCTCTGGAGGACAGAAG 420725 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | ||||| | || || || ||| | || || ||| | || |||| |||||| Sbjct 420724 GTCAAGGTCGTCATGGCCGCTGCCCTCTGGAACCAGCCACACATTCTCATTCTTGACGAG 420665 Query 280800 CCTACCAACTATCTGGACCGCGAGAGC-CTGGGCGCTCTGAGTGC---TGCTCTGGACAC 280855 || |||||||| ||||||| || ||| |||| ||||| ||| || | || Sbjct 420664 CCAACCAACTACTTGGACCGTGA-AGCTTTGGGAGCTCT---TGCCAACGCCATTGAAGG 420609 Query 280856 ATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAGAATTTGT 280900 ||| || || || ||||| ||||||| |||| | | || || || Sbjct 420608 ATTCGGTGGAGGTGTCGTTATCATTTCCCACAACTCTGAGTTCGT 420564 >seq157 Length=558770 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| || | || ||||| || ||||||||||| |||||||| | Sbjct 322302 TCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAGATCCATGAAGTCAAAGGGGTTCTCG 322361 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| |||| ||| ||| | | || || | | |||||| || || || | Sbjct 322362 ACGTTGTAGAGCTTAGGACAGCCCAAAGAAACCAAAAGTCTGTCTGCGACGAATTCAATG 322421 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 ||||| | ||||| ||||||||||| ||||||| Sbjct 322422 TACTGGCTCATCAAGTCAGAGTTCATTCCAATCA 322455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831045077517