Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq38 158 2e-33 seq13 158 2e-33 seq157 111 3e-19 >seq38 Length=108757 Score = 158 bits (174), Expect = 2e-33 Identities = 545/843 (65%), Gaps = 23/843 (3%) Strand=Plus/Plus Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 ||||| || ||||| || | ||| |||||||| | ||| | || ||| | || Sbjct 87312 GGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCTCACACGAAGCCTCC 87371 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG--CGGGCCTTGCCGC 244451 | ||| |||||||| ||| | || |||||| ||||||||| || || |||| || Sbjct 87372 ACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTT--CGG 87429 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 || ||| || | | |||| | ||||| | ||||| ||||| || || || | |||| Sbjct 87430 AGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCCAAGACCGA 87489 Query 244512 TGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 | |||| ||| ||| |||| ||| | |||| || || ||||| || || ||| | Sbjct 87490 TAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATTAATGTCAA 87549 Query 244572 TCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGT 244631 | | |||||| | ||| ||| || | ||| | | || || |||||||| Sbjct 87550 TGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTCAAAGTCGT 87609 Query 244632 ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCA 244691 | |||| || || || ||||| | |||| || || | Sbjct 87610 AA--GTAGT----CT---------TGTTCACAACAAAGGCTGGAAGGGAGATAGAAGCAA 87654 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 |||| |||||||| | || || | ||||||| ||| || || ||||| ||||||| Sbjct 87655 GGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTAC 87714 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 |||||||||||||||||| || ||| || || |||||| ||| ||||| || ||||| | Sbjct 87715 TGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACA 87774 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 |||| | || || |||||| || | | | | | || ||| || | | || Sbjct 87775 ACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCTGAG 87834 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 |||||| | || ||| |||| ||| || || || || || || ||| Sbjct 87835 CCTTGATAACTTTACGGGCC-AACCCTTTGCGTTCATATGATTCATAAAGTGCTTCAAAC 87893 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 | ||||||| || || | || || || || || || | |||| ||| || Sbjct 87894 TTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCAC-TTGGACAGAAGAGAGACCAGTC 87952 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 || | || || | || ||| || | ||| ||||||||| || | ||| | ||| Sbjct 87953 ACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCATAGAACAAGTC 88012 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | | || || ||||| |||||| | || || | || ||||||| || Sbjct 88013 TCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGATATC 88072 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 ||||||| ||||||| ||||| ||| | ||| ||||| |||||||||||||| || || Sbjct 88073 TGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGATC 88132 Query 245170 CAC 245172 ||| Sbjct 88133 CAC 88135 >seq13 Length=692062 Score = 158 bits (174), Expect = 2e-33 Identities = 545/843 (65%), Gaps = 23/843 (3%) Strand=Plus/Plus Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 ||||| || ||||| || | ||| |||||||| | ||| | || ||| | || Sbjct 277108 GGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCTCACACGAAGCCTCC 277167 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG--CGGGCCTTGCCGC 244451 | ||| |||||||| ||| | || |||||| ||||||||| || || |||| || Sbjct 277168 ACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTT--CGG 277225 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 || ||| || | | |||| | ||||| | ||||| ||||| || || || | |||| Sbjct 277226 AGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCCAAGACCGA 277285 Query 244512 TGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 | |||| ||| ||| |||| ||| | |||| || || ||||| || || ||| | Sbjct 277286 TAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATTAATGTCAA 277345 Query 244572 TCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGT 244631 | | |||||| | ||| ||| || | ||| | | || || |||||||| Sbjct 277346 TGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTCAAAGTCGT 277405 Query 244632 ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCA 244691 | |||| || || || ||||| | |||| || || | Sbjct 277406 AA--GTAGT----CT---------TGTTCACAACAAAGGCTGGAAGGGAGATAGAAGCAA 277450 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 |||| |||||||| | || || | ||||||| ||| || || ||||| ||||||| Sbjct 277451 GGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTAC 277510 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 |||||||||||||||||| || ||| || || |||||| ||| ||||| || ||||| | Sbjct 277511 TGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACA 277570 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 |||| | || || |||||| || | | | | | || ||| || | | || Sbjct 277571 ACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCTGAG 277630 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 |||||| | || ||| |||| ||| || || || || || || ||| Sbjct 277631 CCTTGATAACTTTACGGGCC-AACCCTTTGCGTTCATATGATTCATAAAGTGCTTCAAAC 277689 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 | ||||||| || || | || || || || || || | |||| ||| || Sbjct 277690 TTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCAC-TTGGACAGAAGAGAGACCAGTC 277748 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 || | || || | || ||| || | ||| ||||||||| || | ||| | ||| Sbjct 277749 ACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCATAGAACAAGTC 277808 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | | || || ||||| |||||| | || || | || ||||||| || Sbjct 277809 TCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGATATC 277868 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 ||||||| ||||||| ||||| ||| | ||| ||||| |||||||||||||| || || Sbjct 277869 TGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGATC 277928 Query 245170 CAC 245172 ||| Sbjct 277929 CAC 277931 >seq157 Length=558770 Score = 111 bits (122), Expect = 3e-19 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATC---GAGA-GTCCCGACGCAACGTTCGGCGA 42700 |||||||| || ||||| ||||| |||||| || | ||| | | |||| || Sbjct 322776 AAGAAGGCCGATTGGGCTCTCAAGTGGATCTCTGACAAGTCTT----CCTCCTTCGCAGA 322721 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 |||| || || || ||| ||| ||||| || |||||||| || |||| || ||||| Sbjct 322720 ACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTTCCTTTGCTTCCAT 322661 Query 42761 CTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 ||||||||||||| || | | |||||| || || || ||||| || || ||||| Sbjct 322660 CTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCTTACATTCTCTAATGAGCTCATTTC 322601 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 ||| |||||||| || || | |||||||| || || |||| Sbjct 322600 CAGAGACGAGGGCCTCCACACTGACTTTGCTTGTCTTTTGTT 322559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334041547120