Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq335 140 8e-28 seq90 140 8e-28 seq30 140 8e-28 seq2 120 7e-22 >seq335 Length=386496 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||| | ||| || || || ||||| || || ||||| || || Sbjct 39019 TTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAA 39078 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| |||||| || | |||||||||||| || |||||||| || || || || || Sbjct 39079 GATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 39138 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||| ||||| || || || || || ||||| || |||| ||||||||| Sbjct 39139 CTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGAC 39198 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 39199 AAAGATCTGCAT 39210 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | | ||||| |||| ||| || || ||||| || || || | Sbjct 38527 TCCACCACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 38586 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || || || | ||| ||||| |||||||||| |||||| || | ||| Sbjct 38587 AAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGG 38646 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || ||||| || || |||||||| || || | ||| ||| || || Sbjct 38647 GATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAAC 38706 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||| ||||| ||||||| ||||||||| || || ||||| Sbjct 38707 TTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || || ||||| || || ||||| | | Sbjct 158352 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 158293 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || ||||| ||||| |||| |||||| || |||| Sbjct 158292 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGG 158233 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || |||||||| |||| ||| || || ||| Sbjct 158232 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACT 158173 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| || || || |||||||| || || ||||| Sbjct 158172 TCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 Score = 127 bits (140), Expect = 5e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || ||||| | ||| ||||| || ||||| |||||||| || ||| Sbjct 158521 GAGAGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 158462 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || |||||||| || || |||||||| || || | ||| ||||| || Sbjct 158461 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAAC 158402 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 158401 CTCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 158354 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || |||| ||| ||| || || || |||||||||| Sbjct 38756 CCTCCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGAC 38815 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || ||||| ||||| || ||||| || || | ||| Sbjct 38816 AAAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGA 38875 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || || ||||| ||||| |||| ||| || || ||| Sbjct 38876 ATACCCTCCTTATCCTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACT 38935 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 38936 TCCAAGGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || |||||||| || || ||||| || ||| Sbjct 159079 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAG 159020 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || || ||| |||||||| ||||||||||| || || || ||||| Sbjct 159019 ATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTC 158960 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| ||||| | ||||| ||||| || |||| |||||||||| Sbjct 158959 TCAATGGTATCAGAGGATTCAACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACG 158900 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 158899 AAGATTTGCAT 158889 Score = 116 bits (128), Expect = 9e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || |||||||| | || ||||| || ||||| ||||||||||| ||| Sbjct 157825 GAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGG 157766 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || |||||||||||||| || || || || |||| || || || || Sbjct 157765 GATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGAC 157706 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 ||||| ||||| ||||| ||||| || || || ||||| || |||| Sbjct 157705 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || |||| || ||| || ||||| || ||||||| | Sbjct 158887 CCTCCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAG 158828 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || ||||| |||||||| ||||| || || | ||| Sbjct 158827 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGA 158768 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || || || || ||||| || | || || || || Sbjct 158767 ATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAACC 158708 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 158707 TCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 >seq90 Length=625778 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || ||||| || ||| Sbjct 499396 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 499337 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||||||| || || |||||||| || || || |||||| Sbjct 499336 ATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 499277 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || || || ||||| ||||| ||||| || || || ||||||||| Sbjct 499276 TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 499217 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 499216 AAGATCTGCATT 499205 >seq30 Length=118212 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || || ||||| || || ||||| | | Sbjct 47844 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 47785 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || ||||| ||||| |||| |||||| || |||| Sbjct 47784 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGG 47725 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || |||||||| |||| ||| || || ||| Sbjct 47724 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACT 47665 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| || || || ||||||||||| || ||||| Sbjct 47664 TCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || ||| || ||||| || ||||||| | Sbjct 48379 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAG 48320 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || ||||| |||||||| ||||| || || | || Sbjct 48319 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGA 48260 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || || || |||||||| || | || || || || Sbjct 48259 ATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACC 48200 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 48199 TCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || |||||||| || || ||||| || ||| Sbjct 48571 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAG 48512 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || || ||| |||||||| ||||||||||| || || || ||||| Sbjct 48511 ATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTC 48452 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| ||||| | ||||| ||||| || |||| ||||||||| Sbjct 48451 TCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACA 48392 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 48391 AAGATTTGCAT 48381 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || || || | ||| ||||| || ||||| |||||||| || ||| Sbjct 48013 GAGAGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 47954 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| || || |||||||| || || | ||| ||||| || Sbjct 47953 AATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAAC 47894 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 47893 CTCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 47846 Score = 113 bits (124), Expect = 1e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || |||||||| | || ||||| || ||||| |||||||| || ||| Sbjct 47316 GAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 47257 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || |||||||||||||| || || || || |||| || || || || Sbjct 47256 GATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGAC 47197 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 ||||| ||||| ||||| ||||| || ||||| || || || |||| Sbjct 47196 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq2 Length=712398 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || ||||| || | || ||||| |||||| Sbjct 184706 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 184765 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||||||| || || |||||||| || || || ||||| Sbjct 184766 ATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 184825 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| ||||| ||||| || || || ||||||||| Sbjct 184826 TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 184885 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 184886 AAAATTTGCAT 184896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647795041286