Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq155 123 5e-23 seq2 123 5e-23 seq157 93.3 9e-14 seq1 89.7 1e-12 seq413 84.2 5e-11 >seq155 Length=55617 Score = 123 bits (136), Expect = 5e-23 Identities = 135/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 333335 ATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAA 333394 |||||||||||| | || | ||| || ||||| |||||||| | || | ||||||||| Sbjct 38512 ATAACGCCATTGCAAGTATTTGTTTGGAGTCATATCAAGATGTTGTTCCAAGTGGTGGAA 38571 Query 333395 AGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCC-GTTGG 333453 ||||||||| || |||||| ||| ||||| ||||| || ||||| ||| |||| | | Sbjct 38572 AGCATGCTGAGCTACGTAACCAACACGCAAGTTTGGGTGTTTCCACACAGTTCCAGACTG 38631 Query 333454 TGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTT 333510 |||| | | || ||| || || || ||||| || ||||| ||||||||||||| Sbjct 38632 TGGC-TGAACTTCACCCAAAAGGACTTTGATGAGTGTACTTTTACCCGCACCATTTT 38687 >seq2 Length=712398 Score = 123 bits (136), Expect = 5e-23 Identities = 135/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 333335 ATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAA 333394 |||||||||||| | || | ||| || ||||| |||||||| | || | ||||||||| Sbjct 388012 ATAACGCCATTGCAAGTATTTGTTTGGAGTCATATCAAGATGTTGTTCCAAGTGGTGGAA 388071 Query 333395 AGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCC-GTTGG 333453 ||||||||| || |||||| ||| ||||| ||||| || ||||| ||| |||| | | Sbjct 388072 AGCATGCTGAGCTACGTAACCAACACGCAAGTTTGGGTGTTTCCACACAGTTCCAGACTG 388131 Query 333454 TGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTT 333510 |||| | | || ||| || || || ||||| || ||||| ||||||||||||| Sbjct 388132 TGGC-TGAACTTCACCCAAAAGGACTTTGATGAGTGTACTTTTACCCGCACCATTTT 388187 >seq157 Length=558770 Score = 93.3 bits (102), Expect = 9e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||| ||||||||||| | ||| | |||||||| |||||||| || ||| | || Sbjct 322456 CTGATTGGAATGAACTCTGACTTGATGAGCCAGTACATTGAATTCGTCGCAGACAGACTT 322397 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | | | || | | || | |||||| | |||||||||||| ||| ||||| Sbjct 322396 TTGGTTTCTTTGGGCTGTCCTAAGCTCTACAACGTCGAGAACCCCTTTGACTTCATGGAT 322337 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||||| || | ||||| || || |||||||| || ||| Sbjct 322336 CTCATCTCCTTGCAAGGAAAGACCAACTTCTTTGAGAAG 322298 >seq1 Length=1023498 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTT-AAGTGCTTCGGCCATTGCTCCGAGACTCT 332868 |||||| |||||||||||||| || | ||| || || | ||| | ||||| | | | Sbjct 420584 AATGATAACGACACCTCCACCGAA-TCCTTCAATGGCGTTGGCAAGAGCTCCCAAAGCTT 420642 Query 332869 CACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAG 332928 ||||||| | | ||||||| || ||||| | || || | ||| || || | ||| || | Sbjct 420643 CACGGTCCAAGTAGTTGGTTGGCTCGTCAAGAATGAGAATGTGTGGCTGGTTCCAGAGGG 420702 Query 332929 CAGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 ||||| | || || | || | ||| || || ||||| || ||| || || | |||| Sbjct 420703 CAGCGGCCATGACGACCTTGACCTTCTGTCCTCCAGAGAGGGCACTCATACGGTAGTGAG 420762 Query 332989 TTGTAAATTCAGGGTCGAGACCAACATTTGCCA 333021 | | || || || || ||||| |||| | ||| Sbjct 420763 TAGCGAACTCTGGCTCAAGACCGACATCTCCCA 420795 >seq413 Length=198394 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTT-AAGTGCTTCGGCCATTGCTCCGAGACTCT 332868 |||||| |||||||||||||| || | ||| || || | ||| | ||||| | | | Sbjct 100140 AATGATAACGACACCTCCACCGAA-TCCTTCAATGGCGTTGGCAAGAGCTCCCAAAGCTT 100198 Query 332869 CACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAG 332928 ||||||| | | ||||||| || ||||| | || || | ||| || || | ||| || | Sbjct 100199 CACGGTCCAAGTAGTTGGTTGGCTCGTCAAGAATGAGAATGTGTGGCTGGTTCCAGAGGG 100258 Query 332929 CAGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 ||||| | || || | || | ||| || || ||||| || ||| || || | |||| Sbjct 100259 CAGCGGCCATGACGACCTTGACCTTCTGTCCTCCAGAGAGGGCACTCATACGGTAGTGAG 100318 Query 332989 TTGTAAATTCAGGGTCGAGACCAACATTTGCCA 333021 | | || || || || ||||| || | | ||| Sbjct 100319 TAGCGAACTCTGGCTCAAGACCGACGTCTCCCA 100351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873824905950