Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq38 147 3e-30 seq13 147 3e-30 seq157 120 4e-22 >seq38 Length=108757 Score = 147 bits (162), Expect = 3e-30 Identities = 379/574 (66%), Gaps = 19/574 (3%) Strand=Plus/Plus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 ||||||| ||| || || || ||||| || | | | || || | ||||||||| | Sbjct 87636 GGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACG 87695 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 ||||| || || | || | ||| |||||||||||||||| ||| || ||||| || Sbjct 87696 ATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTG 87755 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 ||||| ||||| ||||| | ||||||||| || || ||||| ||||| |||| | ||| Sbjct 87756 TTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATG 87815 Query 114644 GCCTTCCAGA-CATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 114701 || | ||| | | || | | | || | | || ||| ||| | || || Sbjct 87816 GCGTACCAAAGCTTCTGAGCCTTGATAACTTTACG--GGCCAACCCTTTGCGTTCATATG 87873 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | || || |||||||||| ||| ||| | ||| | |||||| || | | || Sbjct 87874 ATTCATAAAGTGCTTCAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTG 87933 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | |||||||||||||| | |||| ||| ||||||||||| || | ||| ||||| Sbjct 87934 GACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCC 87993 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC------CTGATTGAGAC 114875 ||||||| |||| | || ||| ||| ||| || | || || |||||| Sbjct 87994 AGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGA- 88052 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 || | || || | |||||| |||||||| || |||| ||| | || | | || Sbjct 88053 -----TCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCC 88107 Query 114936 CCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | ||| || | || | ||||| | || ||| ||| || || ||||||| Sbjct 88108 CGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCA 88167 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCC 115026 | |||||||| |||| || || || || || || Sbjct 88168 TCGGAATGATTCCATTCGAATGTCCGTTGGTTCC 88201 >seq13 Length=692062 Score = 147 bits (162), Expect = 3e-30 Identities = 379/574 (66%), Gaps = 19/574 (3%) Strand=Plus/Plus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 ||||||| ||| || || || ||||| || | | | || || | ||||||||| | Sbjct 277432 GGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACG 277491 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 ||||| || || | || | ||| |||||||||||||||| ||| || ||||| || Sbjct 277492 ATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTG 277551 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 ||||| ||||| ||||| | ||||||||| || || ||||| ||||| |||| | ||| Sbjct 277552 TTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATG 277611 Query 114644 GCCTTCCAGA-CATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 114701 || | ||| | | || | | | || | | || ||| ||| | || || Sbjct 277612 GCGTACCAAAGCTTCTGAGCCTTGATAACTTTACG--GGCCAACCCTTTGCGTTCATATG 277669 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | || || |||||||||| ||| ||| | ||| | |||||| || | | || Sbjct 277670 ATTCATAAAGTGCTTCAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTG 277729 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | |||||||||||||| | |||| ||| ||||||||||| || | ||| ||||| Sbjct 277730 GACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCC 277789 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC------CTGATTGAGAC 114875 ||||||| |||| | || ||| ||| ||| || | || || |||||| Sbjct 277790 AGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGA- 277848 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 || | || || | |||||| |||||||| || |||| ||| | || | | || Sbjct 277849 -----TCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCC 277903 Query 114936 CCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | ||| || | || | ||||| | || ||| ||| || || ||||||| Sbjct 277904 CGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCA 277963 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCC 115026 | |||||||| |||| || || || || || || Sbjct 277964 TCGGAATGATTCCATTCGAATGTCCGTTGGTTCC 277997 >seq157 Length=558770 Score = 120 bits (132), Expect = 4e-22 Identities = 164/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || |||||| |||||||| | ||| ||||| ||||| ||||| || ||| Sbjct 322571 GCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCT 322630 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | || |||||||| | |||||| || | | ||| ||||| |||||||| ||| Sbjct 322631 GGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATT 322690 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCA--- 126223 |||||||| ||||| |||| || || || || |||||| |||| ||||| Sbjct 322691 CCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACT---TGTCAGAG 322747 Query 126224 AACCACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGAC 126267 | |||||| | ||||| | ||||| ||||| ||||| || || Sbjct 322748 ATCCACTTGAGAGCCCAATCGGCCTTCTTTCT-AATACATGGAAC 322791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350336955960