Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq90 118 1e-21 seq30 105 7e-18 seq335 95.1 1e-14 >seq2 Length=712398 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||| || | || | ||| |||||| ||||| ||||| |||| Sbjct 184669 ACCTCCACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 184728 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 184729 AAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 184788 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| || |||| || | | |||||| || || || Sbjct 184789 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAAC 184848 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 |||| |||||||| || ||||| || ||||| || || |||||||| ||| Sbjct 184849 CTCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTTC 184900 >seq90 Length=625778 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||| || | || | || |||||| || || ||||| |||| Sbjct 499433 ACCTCCACGGAGACGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 499374 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| || || || ||||| ||||||||||| | ||| Sbjct 499373 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGG 499314 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| || |||| | | | |||||| || ||||| Sbjct 499313 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCAC 499254 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 |||| |||||||| || ||||| || ||||| || ||||| ||||||| Sbjct 499253 CTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATTT 499204 >seq30 Length=118212 Score = 105 bits (116), Expect = 7e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| ||||| || ||||| ||||||||||| | ||| Sbjct 47315 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 47256 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| |||||| |||| || | | ||||| || || || Sbjct 47255 ATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACC 47196 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 |||| |||||||| ||||| || || ||||| ||||||||||||| Sbjct 47195 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| |||| || || || | || || | |||||| || ||||| Sbjct 47809 CTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAA 47750 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | | ||||| ||| ||| || |||| | Sbjct 47749 AATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 47690 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | || ||||| || || || || ||||| || Sbjct 47689 TTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGAC 47630 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 47629 GAAGATTTGCAT 47618 >seq335 Length=386496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| |||| || || || | || || | |||||| |||||||| Sbjct 158317 CTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAA 158258 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | | ||||| ||| ||| || |||| | Sbjct 158257 AATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 158198 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | || ||||| || || || || ||||| || Sbjct 158197 TTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGAC 158138 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 158137 AAAGATTTGCAT 158126 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| || | || | ||| |||||| || || |||||||||| || || || | Sbjct 38539 ACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCC 38598 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||| |||||||| || | ||||||||||| | ||| | | ||||| Sbjct 38599 ATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTT 38658 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || || | || | | || || ||| || || || | ||||| Sbjct 38659 GTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGAT 38718 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || | ||||| |||||||||||||| Sbjct 38719 GGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| ||||| || ||||| ||||||||||| | ||| Sbjct 39396 AGAGTACGACCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 39455 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || |||| || | | ||||| || || || Sbjct 39456 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACC 39515 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 |||| ||||| || || || || || || ||||| |||||||||| Sbjct 39516 TCGAGGGTGATTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209832700080