Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq335 109 4e-19 seq30 100 2e-16 >seq335 Length=386496 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | || || ||||| |||||||| |||||||| || ||| ||| | ||| Sbjct 38999 AAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATCT 39058 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || || || || | ||||||||||| ||||| ||| |||||||||||||| Sbjct 39059 TCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCC 39118 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| | || || |||||| ||| || || | |||||||| Sbjct 39119 TGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATGGTC 39178 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||| || ||||| || |||||| Sbjct 39179 TTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 39211 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| || ||| | | | ||||| Sbjct 158334 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 158275 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || |||||| | ||||||||||| ||||| ||| ||||||||||| || Sbjct 158274 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 158215 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || |||| ||||| ||| || || || || |||||||| || Sbjct 158214 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 158155 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||| ||||||||| Sbjct 158154 CCAGTGAGGGTCTTGACAAAGATTTGCATA 158125 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || |||||||| || || | | ||||||| || || Sbjct 159091 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGC 159032 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| || |||||| ||||||||||||||| || || ||| Sbjct 159031 TTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTG 158972 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || ||||| ||| || || || || ||||| || || ||| Sbjct 158971 GCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATGGTCTTTCCAGTC 158912 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||| || || || ||||||||| Sbjct 158911 AAAGTCTTGACGAAGATTTGCATA 158888 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| || | | | || || | ||| Sbjct 38552 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCATCCTCAAGTTGC 38611 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||||||||| ||||| ||| |||||||||||||| || ||| Sbjct 38612 TTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTG 38671 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || ||||| || || || || || ||||| || || ||| Sbjct 38672 GCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGTCTTGCCGGTC 38731 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||| || ||||| ||||||||| Sbjct 38732 AAAGTCTTGACAAAGATTTGCATA 38755 >seq30 Length=118212 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| || ||| | | | ||||| Sbjct 47826 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 47767 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || || ||| | ||||||||||| ||||| ||| ||||||||||| || Sbjct 47766 AACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 47707 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || |||| ||||| ||| || || || || |||||||| || Sbjct 47706 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 47647 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || ||||||||| Sbjct 47646 CCAGTGAGGGTCTTGACGAAGATTTGCATA 47617 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || |||||||| || || | | ||||||| || || Sbjct 48583 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGC 48524 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| || |||||| ||||||||||||||| || || ||| Sbjct 48523 TTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTG 48464 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || ||||| ||| || || || || || || || || ||| Sbjct 48463 GCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGTCTTTCCAGTC 48404 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||| || ||||| ||||||||| Sbjct 48403 AAAGTCTTGACAAAGATTTGCATA 48380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390096552545