Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq335 89.7 5e-13 seq90 86.0 6e-12 >seq2 Length=712398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || | || | || ||||| || ||||| ||||| || | || || Sbjct 184682 CGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCG 184741 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| ||| |||| | |||||||| || || || || ||||||||| Sbjct 184742 TCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTG 184801 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | | ||| || |||| ||| | Sbjct 184802 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATG 184861 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || || || || ||||| |||||| Sbjct 184862 GTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATG 184897 >seq335 Length=386496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| |||||||| |||| | |||||||| || || || || ||||||||| Sbjct 39408 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCCTTG 39467 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | |||| |||||| | |||||| |||| ||| | Sbjct 39468 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATT 39527 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || || ||||| || |||||||| || || |||| Sbjct 39528 GTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | || | ||||| ||||||||||| ||||| || Sbjct 38984 CCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAG 39043 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| ||||| || ||||||| |||||||| || || || Sbjct 39044 AGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGG 39103 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||||| | || | ||| || | || || Sbjct 39104 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACC 39163 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| ||| || ||||| |||||||| Sbjct 39164 TCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 >seq90 Length=625778 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || | || | || ||||| || || || ||||| || | ||||| Sbjct 499420 CGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCG 499361 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| || |||| | |||||||| || || || || ||||||||| Sbjct 499360 TCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTG 499301 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||||| ||||| | | ||| || |||| ||| | Sbjct 499300 TCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATG 499241 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || || || |||||||| Sbjct 499240 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498202576880