Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 129 7e-25 seq13 129 7e-25 seq157 120 4e-22 >seq38 Length=108757 Score = 129 bits (142), Expect = 7e-25 Identities = 379/578 (66%), Gaps = 27/578 (5%) Strand=Plus/Plus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 ||||||| ||| || || || ||||| || | | | || || | ||||||||| | Sbjct 87636 GGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACG 87695 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 ||||| || || | || | ||| |||||||||||||||| ||| || ||||| || Sbjct 87696 ATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTG 87755 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 ||||| ||||| ||||| | ||| ||||| || || ||||| ||||| |||| | ||| Sbjct 87756 TTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATG 87815 Query 116605 GCCTTCCATA-CATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662 || | ||| | | || | | | || | | || ||| ||| | || || Sbjct 87816 GCGTACCAAAGCTTCTGAGCCTTGATAACTTTACG--GGCCAACCCTTTGCGTTCATATG 87873 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT 116721 | || || || ||||||| ||| ||| |||| ||| | |||||| || | | | Sbjct 87874 ATTCATAAAGTGCTTCAAACTTTTCGCCC-CAGCAGTCTTCCAACCCTGGCGCTTCACTT 87932 Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 ||||||||||||||||| | |||| ||| || |||||||| || | ||| |||| Sbjct 87933 GGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATC 87992 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC------CTGATTGAGA 116835 ||||| || |||| | || ||| ||| ||| || | || || |||||| Sbjct 87993 CAGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGA 88052 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 || | || || | |||||| |||||||| || |||| ||| | || | | | Sbjct 88053 ------TCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCC 88106 Query 116896 CCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 || | |||| || | || | ||||| | || || || || || ||| Sbjct 88107 CC---GGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGA 88163 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC 116987 ||||| |||||||| |||| || || || || || || Sbjct 88164 AGCATCGGAATGATTCCATTCGAATGTCCGTTGGTTCC 88201 >seq13 Length=692062 Score = 129 bits (142), Expect = 7e-25 Identities = 379/578 (66%), Gaps = 27/578 (5%) Strand=Plus/Plus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 ||||||| ||| || || || ||||| || | | | || || | ||||||||| | Sbjct 277432 GGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACG 277491 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 ||||| || || | || | ||| |||||||||||||||| ||| || ||||| || Sbjct 277492 ATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTG 277551 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 ||||| ||||| ||||| | ||| ||||| || || ||||| ||||| |||| | ||| Sbjct 277552 TTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATG 277611 Query 116605 GCCTTCCATA-CATCGGCGGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662 || | ||| | | || | | | || | | || ||| ||| | || || Sbjct 277612 GCGTACCAAAGCTTCTGAGCCTTGATAACTTTACG--GGCCAACCCTTTGCGTTCATATG 277669 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT 116721 | || || || ||||||| ||| ||| |||| ||| | |||||| || | | | Sbjct 277670 ATTCATAAAGTGCTTCAAACTTTTCGCCC-CAGCAGTCTTCCAACCCTGGCGCTTCACTT 277728 Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 ||||||||||||||||| | |||| ||| || |||||||| || | ||| |||| Sbjct 277729 GGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATC 277788 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC------CTGATTGAGA 116835 ||||| || |||| | || ||| ||| ||| || | || || |||||| Sbjct 277789 CAGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGA 277848 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 || | || || | |||||| |||||||| || |||| ||| | || | | | Sbjct 277849 ------TCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCC 277902 Query 116896 CCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 || | |||| || | || | ||||| | || || || || || ||| Sbjct 277903 CC---GGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGA 277959 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC 116987 ||||| |||||||| |||| || || || || || || Sbjct 277960 AGCATCGGAATGATTCCATTCGAATGTCCGTTGGTTCC 277997 >seq157 Length=558770 Score = 120 bits (132), Expect = 4e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || |||||| |||||||| | ||| ||||| ||||| ||||| || || Sbjct 322570 AGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCC 322629 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| | || |||||||| | |||||| || | | ||| || ||||||||||| || Sbjct 322630 TGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAAT 322689 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 |||||||| ||||| |||| || || || || |||||| ||||| | | Sbjct 322690 TCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAGAT 322749 Query 127699 CCACTTCATCGCCCACTGTGCCTT-TTTCTCGATACATGGGAC 127740 |||||| | ||||| | ||||| ||||| |||||||| || Sbjct 322750 CCACTTGAGAGCCCAATCGGCCTTCTTTCT-AATACATGGAAC 322791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503848716920