Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq90 131 2e-25 seq2 120 3e-22 seq157 118 1e-21 seq30 114 1e-20 seq335 111 2e-19 >seq90 Length=625778 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || ||||| || || |||||||| || ||||||||| |||| || ||| | Sbjct 499204 AAATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTT 499263 Query 38302 CCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | ||||| | || | || |||| ||||| |||||||| || | ||| Sbjct 499264 CCGACACTATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGAC 499322 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || || || ||||| || |||| |||||||| |||||| Sbjct 499323 CAGCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTAC 499382 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||| |||| || || | || ||||| Sbjct 499383 AACATCCAGAAGGAGTCGACCCTCCACCTCGTCTTGCGT 499421 >seq2 Length=712398 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || || ||||| || ||||||||| |||| || ||| | Sbjct 184899 AACATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAGTCT 184840 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || |||| ||||| |||||||| || | || Sbjct 184839 TCCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGA 184781 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| || || ||||| || |||| || ||||| ||||| Sbjct 184780 CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTTCTGACTA 184721 Query 38420 CAACATCCAAAAGGA 38434 |||||| || ||||| Sbjct 184720 CAACATTCAGAAGGA 184706 >seq157 Length=558770 Score = 118 bits (130), Expect = 1e-21 Identities = 328/499 (66%), Gaps = 3/499 (1%) Strand=Plus/Plus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 ||| || ||||| ||||| || |||||||| || || || ||||| | |||||| ||||| Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAG 132722 ||| || || |||||||| | ||||||| |||| | | | || || | Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAAAGAAACCAA 322396 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 || ||||| || ||||| || ||||| || ||| || | || | ||| | ||| Sbjct 322397 AAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAATCAG 322456 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 ||| || || || || | | ||| |||||| | |||| || || | ||| || Sbjct 322457 TTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGACAAT 322516 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAA-ATGCTTGAACATCAAGCAAGCAA 132901 | ||| | | | ||| | | ||| | ||| |||| | ||||||| Sbjct 322517 CTTGTAGACGTAT-CGACTGTTGGCTTATTCTTCAACAAGCTA-AACAAAAGACAAGCAA 322574 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 |||| || | ||||||||| ||||||||||| || || ||| || | ||| |||| Sbjct 322575 AGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCTGGCA 322634 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 | | ||| || || |||||||| || |||| || || || || ||||| | |||| Sbjct 322635 TCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATTCCCT 322694 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 | ||| | |||||||| || || || || |||| | || ||| | |||||| Sbjct 322695 CCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAGATCCACT 322754 Query 133082 GCAGCGCCCATTCGGCCTT 133100 || ||||| |||||||| Sbjct 322755 TGAGAGCCCAATCGGCCTT 322773 >seq30 Length=118212 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || |||||| | || Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| || || || ||||| || | ||||| Sbjct 47678 GACACTATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 47736 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || || ||| |||| || | ||||||||| |||||||| Sbjct 47737 GCAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAA 47796 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| |||||||| | || || || ||||| || ||| Sbjct 47797 CATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGT 47833 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || |||||||| | || || ||| | | Sbjct 48153 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 48212 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 48213 GACACCATCGAAAACG-TCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCA 48271 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 48272 GCAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 48331 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || || | || || ||| Sbjct 48332 CATCCAGAAGGAATCTACCCTTCACCTTGTCCTCCGT 48368 >seq335 Length=386496 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || |||||||| | || || ||| | | Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 158721 GACACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 158780 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || || ||||| || || | ||||| ||| |||||||||| Sbjct 158781 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 158840 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || | || || ||| Sbjct 158841 ATCCAGAAGGAATCTACCCTTCACCTTGTCCTCCGT 158876 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||| || | || |||||| | || Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| || || || ||||| || | ||||| Sbjct 158186 GACACTATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 158244 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || || ||| |||| || | ||||||||| |||||||| Sbjct 158245 GCAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAA 158304 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| |||||||| | || || || ||||| || ||| Sbjct 158305 CATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGT 158341 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||||| || | | Sbjct 157659 TGCAAATCTTCGTAAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTG 157718 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 ||| | | | | || | ||||||| ||||| || ||||| || | ||||||| Sbjct 157719 ACACTATCGAGAATGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAAC 157778 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 38411 |||| ||||| | || || || ||||| || |||| || || ||| Sbjct 157779 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTC 157825 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| ||||||||||| ||||| || || || |||||| |||| |||||| || | | Sbjct 39561 TGCAAATCTTCGTAAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTCGAGTCCTCTG 39502 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 ||| | | | | | || | || |||| ||||| ||||| ||||| | ||||| | Sbjct 39501 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCTGACCAGC 39442 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 38411 |||| ||||| | || || || ||||| || |||| || || ||| Sbjct 39441 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGTCGTACTCTC 39395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170067806080