Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04-
20] 437 sequences; 57,018,351 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq335 125 3e-23
seq30 102 3e-16
>seq335
Length=386496
Score = 125 bits (138), Expect = 3e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || ||||| ||||| || || ||||| | || || || |||||
Sbjct 38982 ATGCAGATCTTCGTCAAGACACTTACTGGAAAGACCATTACCTTGGAAGTCGAGTCATCC 38923
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | || || ||||| |||||||| || ||||| ||||| ||
Sbjct 38922 GACACTATTGAAAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAG 38863
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | |||||| | || || || ||||||||||| | |||||| | || |||||
Sbjct 38862 CAACGTCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGCACTTTGTCCGACTATAAC 38803
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| | || ||||||
Sbjct 38802 ATTCAGAAGGAATCCACTCTTCAC 38779
Score = 107 bits (118), Expect = 8e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || || || || |||||||| ||||| || |||
Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| ||| | | || || |||||||| ||||| || ||||| ||||| ||
Sbjct 158721 GACACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 158780
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | || ||| | || || || ||||||||||| | ||| | | || || ||
Sbjct 158781 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 158840
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || ||||||
Sbjct 158841 ATCCAGAAGGAATCTACCCTTCAC 158864
Score = 100 bits (110), Expect = 1e-15
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || ||||||| || ||||| || || || |||||||| |||
Sbjct 158354 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTTGAATCCTCT 158413
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | || || || || || |||||||||||||| || || ||
Sbjct 158414 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 158473
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207
|| ||| | || || | || || ||||||||||||||
Sbjct 158474 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGATGG 158511
Score = 95.1 bits (104), Expect = 5e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||| || || || || ||| | || ||||| || |||
Sbjct 38754 ATGCAAATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTTTGGAAGTTGAGTCGTCT 38695
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | || || || ||||| ||||||||||| || ||||| ||
Sbjct 38694 GATACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 38635
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| || ||| | || || |||||||| ||||| | || | | ||||| ||
Sbjct 38634 CAGCGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCCTTTCTGATTACAAC 38575
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261
|| | ||||| | || |||||| | || ||
Sbjct 38574 ATCCAGAAGGAGTCCACTCTTCACCTCGTCTT 38543
Score = 95.1 bits (104), Expect = 5e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||| || || ||||||||||| |||||||| ||
Sbjct 39210 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTCTTGAGGTTGAATCCTCC 39151
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | || || || || || ||||||||||| || ||||| ||
Sbjct 39150 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCTGACCAG 39091
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| || || | || || || | |||||||| |||| | | || || ||
Sbjct 39090 CAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGAACCCTCTCTGACTACAAC 39031
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261
||| | || || | || || ||| | || ||
Sbjct 39030 ATTCAAAAAGAATCTACTCTCCACCTTGTTTT 38999
Score = 95.1 bits (104), Expect = 5e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || ||||||| || || || ||| | || |||||||| |||
Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| |||| || || || ||||||||||||||||| || || ||
Sbjct 158949 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 159008
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| || || | || || || | ||||| || | || | | || || ||
Sbjct 159009 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 159068
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261
||| | ||||| | || || ||| | || ||
Sbjct 159069 ATTCAGAAGGAGTCTACCCTCCACCTTGTCTT 159100
Score = 89.7 bits (98), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || || ||||| || || |||||| | || || || |||||
Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | || || || || |||||||||||||| || || || ||
Sbjct 158186 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 158245
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| |||||| | || || || | |||||||| | || | | || || ||
Sbjct 158246 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 158305
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || |||||||| ||
Sbjct 158306 ATTCAAAAGGAGTCTACTCTTCACTTGGT 158334
>seq30
Length=118212
Score = 102 bits (112), Expect = 3e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || || || || |||||||| ||||| || |||
Sbjct 48153 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 48212
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| ||| | || || |||||||| ||||| || ||||| ||||| ||
Sbjct 48213 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCAG 48272
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | || ||| | || || || ||||||||||| | ||| | | || || ||
Sbjct 48273 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 48332
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || ||||||
Sbjct 48333 ATCCAGAAGGAATCTACCCTTCAC 48356
Score = 95.1 bits (104), Expect = 5e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||| || ||||| ||| | || |||||||| |||
Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| |||| || || || ||||||||||||||||| || || ||
Sbjct 48441 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 48500
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| || || | || || || | ||||| || | || | | || || ||
Sbjct 48501 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 48560
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261
||| | ||||| | || || ||| | || ||
Sbjct 48561 ATTCAGAAGGAGTCTACCCTCCACCTTGTCTT 48592
Score = 93.3 bits (102), Expect = 2e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || ||||| || || |||||| | || || || |||||
Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | || || || || |||||||||||||| || || || ||
Sbjct 47678 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 47737
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| |||||| | || || || | |||||||| | || | | || || ||
Sbjct 47738 CAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 47797
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || |||||||| ||
Sbjct 47798 ATTCAAAAGGAGTCTACTCTTCACTTGGT 47826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975707337829196
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