Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq38 141 1e-28 seq13 141 1e-28 seq157 122 1e-22 >seq38 Length=108757 Score = 141 bits (156), Expect = 1e-28 Identities = 714/1121 (64%), Gaps = 69/1121 (6%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || || || || || || |||| || ||||| |||||||| || || || ||| || Sbjct 88201 GGAACCAACGGACATTCGAATGGAATCATTCCGATGCTTCGTGTCTTCAATAACACTGCT 88142 Query 111963 CGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAG 112016 |||||||| | |||| || ||||| | ||| || | || |||| | ||| Sbjct 88141 CGCTATGTGGATCAAGGAGGCAACAAGCGTCCC--GGGGCCTTT-GCTATCTACTTGGAG 88085 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA------GGTGAT 112070 ||||||||||| |||||| | || |||||||| |||||| | ||| | Sbjct 88084 CCATGGCACGCAGATATCTTTGAATTCCTTGA------TCTCAAGAAGAATACTGGTAAA 88031 Query 112071 GAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 112128 ||||| |||| | || || | |||| ||||||||||| || | || |||| Sbjct 88030 GAGGAAAACCGCGCT--CGAGACTTGTTCTATGCTCTCTGGATCTGTGACTTGTTTATGA 87973 Query 112129 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCT 112188 || | || ||| | ||| | ||||||||||| |||||| | || || || | Sbjct 87972 AGCGTGTGGAGAGCAATGGTGACTGGTCTCTCTTCTGTCCAAGTGAAGCGCCAGGGTTGG 87913 Query 112189 CCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGG 112247 || ||| | ||| || |||||||||| || || | || || || | | Sbjct 87912 AAGACTGCTG-GGGCGAAAAGTTTGAAGCACTTTATGAATCATATGAACGCAAAGGGTTG 87854 Query 112248 GCGACTGCGACGGTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACC 112304 || | | | | | || ||| | || | | ||| | || ||| | ||||||||||| Sbjct 87853 GC--CCGTAAAGTTATCAAGGCT-CAGAAGCTTTGGTACGCCATTATTGAGTCTCAAACC 87797 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 ||||||||||| ||||| ||| | |||||||| ||||||||| ||| ||| ||| || Sbjct 87796 GAGACTGGTACCCCATACATGTTGTACAAAGATGCCTGTAACAGCAAGTCTAACCAACAG 87737 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 || ||||| |||||| | ||||| || ||||||||| | || | || Sbjct 87736 AACTTGGGCACCATCAAGTGCAGTAACCTTTGCACAGAAATCGTCGAGTACACTTCTCCT 87677 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 || || | || || |||||||| || || ||| | || || || | || | | Sbjct 87676 GACGAAATCGCCGTCTGTAACCTTGCTTCTATCTCCCTTCC--AGCCTTTG----TTGTG 87623 Query 112485 ACAAAGAC-ATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAAC 112541 | ||||| | || || | ||| ||||||| | | || || ||| | || || ||| Sbjct 87622 AACAAGACTACTTACGACTTTGAGAAACTCCGCCAGGTCACTAAAGTCATGACCAAGAAC 87563 Query 112542 CTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAAT 112598 | |||| | ||||| | ||||| ||||| | ||||| || || || || Sbjct 87562 TTGAACAAGATCATTGACATTAATTTCTACCCTGTCATTGAG---GCCAAGAACTCAAAC 87506 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT 112658 ||| | ||||| || || ||||| || || ||||| || || |||| ||||| Sbjct 87505 ATGCGTCACCGACCTATCGGTCTTGGAGTTCAAGGACTTGCCGATGCTTTCATCAAGATG 87446 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 || | |||| || ||||| | |||||| || | || | || ||||| | ||| Sbjct 87445 CGTCTTCCATTCGACTCCGAAGGAGCGAAAGAGCTGAACAAGAAGATCTTTGAAAACATG 87386 Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAA 112775 || |||| || | ||||| |||| ||| | || || || |||||||| | Sbjct 87385 TACTACGCTGCCGTGGAGGC---TTCGTGTGAGATTGCCGAAAAAGACGGTCCATACTCA 87329 Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA- 112834 || | || || ||| ||| |||| | | ||| || | ||| | ||| Sbjct 87328 ACTTACGAAGGAAGCCCAATGTCAAAAGGACAGTTGCAACCAGACCTTTGGAACATTGAT 87269 Query 112835 --GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGG------AGAAG 112886 || ||| | | | |||||||| ||||| ||| |||| || | Sbjct 87268 TTGAGCAACTCTGATTTGGACTGGGATGCTCT------TCGCGCTAAGGTGGCCAAGTAC 87215 Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 ||| | || ||| | | |||||||| ||||||||||| || || || | || || | Sbjct 87214 GGTGTCCGAAACTCTTTGTTGATGGCTCCAATGCCAACTGCATCGACATCTCAGATTCTT 87155 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 ||||| || || || |||||||| ||||| | || ||||| Sbjct 87154 GGTAACAACGAGTGTTTTGAACCGTACACAAGCAATATCTA 87114 >seq13 Length=692062 Score = 141 bits (156), Expect = 1e-28 Identities = 714/1121 (64%), Gaps = 69/1121 (6%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || || || || || || |||| || ||||| |||||||| || || || ||| || Sbjct 277997 GGAACCAACGGACATTCGAATGGAATCATTCCGATGCTTCGTGTCTTCAATAACACTGCT 277938 Query 111963 CGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAG 112016 |||||||| | |||| || ||||| | ||| || | || |||| | ||| Sbjct 277937 CGCTATGTGGATCAAGGAGGCAACAAGCGTCCC--GGGGCCTTT-GCTATCTACTTGGAG 277881 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA------GGTGAT 112070 ||||||||||| |||||| | || |||||||| |||||| | ||| | Sbjct 277880 CCATGGCACGCAGATATCTTTGAATTCCTTGA------TCTCAAGAAGAATACTGGTAAA 277827 Query 112071 GAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 112128 ||||| |||| | || || | |||| ||||||||||| || | || |||| Sbjct 277826 GAGGAAAACCGCGCT--CGAGACTTGTTCTATGCTCTCTGGATCTGTGACTTGTTTATGA 277769 Query 112129 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCT 112188 || | || ||| | ||| | ||||||||||| |||||| | || || || | Sbjct 277768 AGCGTGTGGAGAGCAATGGTGACTGGTCTCTCTTCTGTCCAAGTGAAGCGCCAGGGTTGG 277709 Query 112189 CCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGG 112247 || ||| | ||| || |||||||||| || || | || || || | | Sbjct 277708 AAGACTGCTG-GGGCGAAAAGTTTGAAGCACTTTATGAATCATATGAACGCAAAGGGTTG 277650 Query 112248 GCGACTGCGACGGTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACC 112304 || | | | | | || ||| | || | | ||| | || ||| | ||||||||||| Sbjct 277649 GC--CCGTAAAGTTATCAAGGCT-CAGAAGCTTTGGTACGCCATTATTGAGTCTCAAACC 277593 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 ||||||||||| ||||| ||| | |||||||| ||||||||| ||| ||| ||| || Sbjct 277592 GAGACTGGTACCCCATACATGTTGTACAAAGATGCCTGTAACAGCAAGTCTAACCAACAG 277533 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 || ||||| |||||| | ||||| || ||||||||| | || | || Sbjct 277532 AACTTGGGCACCATCAAGTGCAGTAACCTTTGCACAGAAATCGTCGAGTACACTTCTCCT 277473 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 || || | || || |||||||| || || ||| | || || || | || | | Sbjct 277472 GACGAAATCGCCGTCTGTAACCTTGCTTCTATCTCCCTTCC--AGCCTTTG----TTGTG 277419 Query 112485 ACAAAGAC-ATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAAC 112541 | ||||| | || || | ||| ||||||| | | || || ||| | || || ||| Sbjct 277418 AACAAGACTACTTACGACTTTGAGAAACTCCGCCAGGTCACTAAAGTCATGACCAAGAAC 277359 Query 112542 CTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAAT 112598 | |||| | ||||| | ||||| ||||| | ||||| || || || || Sbjct 277358 TTGAACAAGATCATTGACATTAATTTCTACCCTGTCATTGAG---GCCAAGAACTCAAAC 277302 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT 112658 ||| | ||||| || || ||||| || || ||||| || || |||| ||||| Sbjct 277301 ATGCGTCACCGACCTATCGGTCTTGGAGTTCAAGGACTTGCCGATGCTTTCATCAAGATG 277242 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 || | |||| || ||||| | |||||| || | || | || ||||| | ||| Sbjct 277241 CGTCTTCCATTCGACTCCGAAGGAGCGAAAGAGCTGAACAAGAAGATCTTTGAAAACATG 277182 Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAA 112775 || |||| || | ||||| |||| ||| | || || || |||||||| | Sbjct 277181 TACTACGCTGCCGTGGAGGC---TTCGTGTGAGATTGCCGAAAAAGACGGTCCATACTCA 277125 Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA- 112834 || | || || ||| ||| |||| | | ||| || | ||| | ||| Sbjct 277124 ACTTACGAAGGAAGCCCAATGTCAAAAGGACAGTTGCAACCAGACCTTTGGAACATTGAT 277065 Query 112835 --GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGG------AGAAG 112886 || ||| | | | |||||||| ||||| ||| |||| || | Sbjct 277064 TTGAGCAACTCTGATTTGGACTGGGATGCTCT------TCGCGCTAAGGTGGCCAAGTAC 277011 Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 ||| | || ||| | | |||||||| ||||||||||| || || || | || || | Sbjct 277010 GGTGTCCGAAACTCTTTGTTGATGGCTCCAATGCCAACTGCATCGACATCTCAGATTCTT 276951 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 ||||| || || || |||||||| ||||| | || ||||| Sbjct 276950 GGTAACAACGAGTGTTTTGAACCGTACACAAGCAATATCTA 276910 >seq157 Length=558770 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGC 102168 |||||||||||||| |||||| || ||||||||| | |||||| | | ||||| Sbjct 322793 CAGTTCCATGTATTAGAAAGAAGGCCGATTGGGCTCTCAAGTGGATCTCTGACAAGTCTT 322734 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||| || || || || | || || || || ||||| || ||||||||||||| Sbjct 322733 CCTCCTTCGCAGAACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTT 322674 Query 102229 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||| ||| | || | |||||||||||||| || | |||||||| || ||||| Sbjct 322673 CCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCTTACATTCTCT 322615 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| || || | |||||||| |||||| || ||||| Sbjct 322614 AATGAGCTCATTTCCAGAGACGAGGGCCTCCACACTGACTTTGC 322571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739009194640