Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq38 122 1e-22 seq13 122 1e-22 seq157 100 3e-16 seq46 89.7 6e-13 >seq38 Length=108757 Score = 122 bits (134), Expect = 1e-22 Identities = 239/347 (69%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 109512 AGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAAT 109571 ||||| | |||||||| |||||| ||||| ||||||||||||||| |||||| ||| Sbjct 86873 AGACTTACCGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAAT 86932 Query 109572 TTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAAT 109631 |||||||||||||||||| | | ||||| |||| | ||||| | |||| ||| | Sbjct 86933 TTCCCAGACAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTGATGCGTTGGAC 86992 Query 109632 AGAGCCA---CCAGCCTTCACCATGAGATCCTTCATCTCTTTCG-ACCAGAGACCGACCT 109687 || ||| |||| | || | | |||||| | ||| ||| | ||| | | Sbjct 86993 TGATCCATTCTCAGC---AATAATACGGTTCTTCAT-GGTGTCGTTCCATAAACCAAGTT 87048 Query 109688 -TTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGT 109746 | || | |||||||| ||| || || | |||||||| ||||| || Sbjct 87049 CGGTCAAGTCCTTCAACAAG-TGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGG 87107 Query 109747 CGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCA 109806 || |||||| || | ||||| ||||| |||||||| ||||| || || || || | Sbjct 87108 CGAGTGTAGATATTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGAT 87167 Query 109807 GTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || || || || ||||| |||||||| | | | |||||||| ||| Sbjct 87168 GTCGATGCAGTTGGCATTGGAGCCATCAACAAAGAGTTTCGGACACC 87214 >seq13 Length=692062 Score = 122 bits (134), Expect = 1e-22 Identities = 239/347 (69%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 109512 AGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAAT 109571 ||||| | |||||||| |||||| ||||| ||||||||||||||| |||||| ||| Sbjct 276669 AGACTTACCGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAAT 276728 Query 109572 TTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAAT 109631 |||||||||||||||||| | | ||||| |||| | ||||| | |||| ||| | Sbjct 276729 TTCCCAGACAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTGATGCGTTGGAC 276788 Query 109632 AGAGCCA---CCAGCCTTCACCATGAGATCCTTCATCTCTTTCG-ACCAGAGACCGACCT 109687 || ||| |||| | || | | |||||| | ||| ||| | ||| | | Sbjct 276789 TGATCCATTCTCAGC---AATAATACGGTTCTTCAT-GGTGTCGTTCCATAAACCAAGTT 276844 Query 109688 -TTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGT 109746 | || | |||||||| ||| || || | |||||||| ||||| || Sbjct 276845 CGGTCAAGTCCTTCAACAAG-TGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGG 276903 Query 109747 CGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCA 109806 || |||||| || | ||||| ||||| |||||||| ||||| || || || || | Sbjct 276904 CGAGTGTAGATATTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGAT 276963 Query 109807 GTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || || || || ||||| |||||||| | | | |||||||| ||| Sbjct 276964 GTCGATGCAGTTGGCATTGGAGCCATCAACAAAGAGTTTCGGACACC 277010 >seq157 Length=558770 Score = 100 bits (110), Expect = 3e-16 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || | || |||||||||||| ||| ||| || ||||| | || Sbjct 322583 TGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCTGGCATCAAGCCA 322642 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| | ||| ||||| ||||| || |||||||| | Sbjct 322643 CGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATTCCCTCCACGACG 322702 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTC---GAACCACTTGAGAGCC 119684 |||||||| | || || || || || | ||||||||| || ||||||||||||| Sbjct 322703 GCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAGATCCACTTGAGAGCC 322762 Query 119685 CAGTTGGCCTT 119695 || | |||||| Sbjct 322763 CAATCGGCCTT 322773 >seq46 Length=651723 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 295890 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 295949 Query 136777 GGGAACA 136783 ||| || Sbjct 295950 TGGAGCA 295956 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 297651 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 297710 Query 136777 GGGAACA 136783 ||| || Sbjct 297711 TGGAGCA 297717 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 299397 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 299456 Query 136777 GGGAACA 136783 ||| || Sbjct 299457 TGGAGCA 299463 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 301089 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 301148 Query 136777 GGGAACA 136783 ||| || Sbjct 301149 TGGAGCA 301155 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 302787 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 302846 Query 136777 GGGAACA 136783 ||| || Sbjct 302847 TGGAGCA 302853 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 304485 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 304544 Query 136777 GGGAACA 136783 ||| || Sbjct 304545 TGGAGCA 304551 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 306183 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 306242 Query 136777 GGGAACA 136783 ||| || Sbjct 306243 TGGAGCA 306249 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 307881 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 307940 Query 136777 GGGAACA 136783 ||| || Sbjct 307941 TGGAGCA 307947 Score = 82.4 bits (90), Expect = 9e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTC 136766 ||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 285529 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTC 285578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972782718600