Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq335 161 2e-34 seq30 156 9e-33 seq2 152 1e-31 seq90 125 2e-23 >seq335 Length=386496 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | |||||||||||| ||||| || ||||||||||| ||||| || | || |||| Sbjct 38992 GAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCG 39051 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || || ||||| | || || ||||| || || || ||||| Sbjct 39052 GCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTC 39111 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || |||||| ||||||||||| || || ||| || ||||| || Sbjct 39112 CTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGT 39171 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| |||||||| || || || | ||||| Sbjct 39172 AATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || || ||||| |||| ||||| | |||||||| Sbjct 158869 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 158810 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| ||||| || ||||| || || ||||||||| Sbjct 158809 AGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGA 158750 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| || || ||||| || | |||||| Sbjct 158749 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTT 158690 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 158689 CCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||||||||||||||| || || || |||||||| | ||| || | ||||| Sbjct 38542 CAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCATC 38601 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || ||||| || |||||||| | || || ||||| || || || ||||| ||||| Sbjct 38602 CTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTC 38661 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| |||||||||||||| || || || ||||| | || | || Sbjct 38662 TTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGT 38721 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| || || || | |||||| Sbjct 38722 CTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||||||||| || || ||||| || || |||| | ||| | |||||||| Sbjct 38773 AACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCTTC 38832 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| ||||| ||||| ||||| || ||||| || || || || || Sbjct 38833 AAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCCTG 38892 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || || ||||| ||||| || || ||||| | ||||| ||||| Sbjct 38893 AATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTCTT 38952 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | ||||| Sbjct 38953 TCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| |||||||| || || ||||| || ||||| ||||| || | ||| || | || || Sbjct 159101 CAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTC 159042 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | |||||| || || ||||| | ||||| ||||| || ||||| ||||| || || Sbjct 159041 TTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATC 158982 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| |||||||||||||| || || ||| ||||| | || | || Sbjct 158981 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATGGT 158922 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||||||| || ||||| | |||||| Sbjct 158921 CTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 ||||| | |||||||| || ||||| || || ||||| || || || |||||||| ||| Sbjct 158520 AGAGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 158461 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || ||||| ||||| || || || ||| |||||||||||||| || || ||| || Sbjct 158460 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACC 158401 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | |||||||| |||||||| || ||||| | ||||| Sbjct 158400 TCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 158354 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 ||||| | || |||||||||||||| || || ||||| || || || ||||| || ||| Sbjct 39396 AGAGTACGACCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 39455 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || || || |||||||| || || |||||| ||||| |||||||| || || || Sbjct 39456 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACC 39515 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 || ||||| | |||||||| || | ||||||||||| | ||||| Sbjct 39516 TCGAGGGTGATTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 ||||| | || |||||||||||||| || || ||||| || || ||||||||||| || Sbjct 157824 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGG 157765 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || ||||| ||||| || ||||| |||||| ||||| || ||||| || || || Sbjct 157764 ATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACC 157705 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 || ||||| | ||||| || || | ||||||||||| | ||||| Sbjct 157704 TCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 >seq30 Length=118212 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || || ||||| |||| ||||| | |||||||| Sbjct 48361 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 48302 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| ||||| || ||||| || || ||||||||| Sbjct 48301 AGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCTTGA 48242 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| || || ||||| || | |||||| Sbjct 48241 ATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTT 48182 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 48181 CCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| |||||||| || || ||||| || ||||| ||||| || | ||| || | || || Sbjct 48593 CAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTC 48534 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | |||||| || || ||||| | ||||| ||||| || ||||| ||||| || || Sbjct 48533 TTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATC 48474 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| |||||||||||||| || || ||| ||||| | || | || Sbjct 48473 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGT 48414 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||||||| || || || | |||||| Sbjct 48413 CTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 48381 Score = 116 bits (128), Expect = 8e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 ||||| | ||||| || || ||||| || || ||||| || || || |||||||| ||| Sbjct 48012 AGAGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 47953 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || || || ||||| || || || ||| |||||||||||||| || || ||| || Sbjct 47952 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACC 47893 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | |||||||| |||||||| || ||||| | ||||| Sbjct 47892 TCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 47846 Score = 102 bits (112), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 ||||| | || |||||||||||||| || || ||||| || || || |||||||| || Sbjct 47315 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 47256 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || ||||| ||||| || ||||| |||||| ||||| || ||||| || || || Sbjct 47255 ATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACC 47196 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 || ||||| | ||||| || || | || || || || | ||||| Sbjct 47195 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq2 Length=712398 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| |||||||| || |||||||| || ||||| ||||| || | ||| || | Sbjct 184678 GAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACG 184737 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || |||||||| || || || ||||| || || || || || Sbjct 184738 GCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTC 184797 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || |||||||||||| |||||||| ||| || || || ||||| Sbjct 184798 CTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGT 184857 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | || || ||||| | |||||| Sbjct 184858 GATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCAT 184896 >seq90 Length=625778 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || ||||| || || ||||| || || || ||||| || | ||| || | Sbjct 499424 GAGACGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCG 499365 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || || ||||| || || || ||||| || || || || || Sbjct 499364 GCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTC 499305 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||||||||| || || ||||| ||| ||||| || ||||| Sbjct 499304 CTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGT 499245 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 | ||||| || || | || || ||||| | ||||||| || Sbjct 499244 GATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATTTCTG 499201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475387943179