Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq30 127 1e-24 seq335 118 7e-22 seq90 114 8e-21 seq2 109 4e-19 >seq30 Length=118212 Score = 127 bits (140), Expect = 1e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| || ||||| |||||||| || Sbjct 48344 TTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAA 48285 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| |||| | ||||||||||| |||||| |||||| Sbjct 48284 GATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTT 48225 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | || ||||| ||||||||||| ||||| || Sbjct 48224 TTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGAC 48165 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 48164 GAAGATCTGCATA 48152 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || | || |||| ||| ||||| ||||| Sbjct 48571 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAG 48512 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | || ||||| || ||||| || ||| Sbjct 48511 ATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTC 48452 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||||| || | || || || ||||| || | |||||| ||| Sbjct 48451 TCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACA 48392 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 48391 AAGATTTGCATA 48380 >seq335 Length=386496 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| || ||||| |||||||| || Sbjct 158852 TTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAA 158793 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | ||||||||||| |||||| ||||| Sbjct 158792 GATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACATT 158733 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | || ||||| ||||||||||| ||||| || Sbjct 158732 TTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGAC 158673 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 158672 GAAGATCTGCATA 158660 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||| | || |||||| |||||||| ||||| || ||| |||| |||| Sbjct 38998 CAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATC 39057 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||| ||||||||||| || | || |||||||| | || | || |||||||| Sbjct 39058 TTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTC 39117 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||||| || || || | || || ||||| || | || ||| Sbjct 39118 CTGGATCTTGGCCTTGAC--ATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATG 39175 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || | |||||| ||||||||||||||| Sbjct 39176 GTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 39211 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| ||| ||||||||||||||||| || | | || |||| || Sbjct 38773 AACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCTTC 38832 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || ||||||||||| | || | |||||||| || Sbjct 38833 AAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCCTG 38892 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || | | || | || | ||| || || | ||| ||||| || Sbjct 38893 AATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTCTT 38952 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || ||||| || |||||||||||| Sbjct 38953 TCCAGTAAGTGTCTTGACGAAGATCTGCATA 38983 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || | || |||| ||| ||||| ||||| Sbjct 159079 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAG 159020 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | || ||||| || ||||| || ||| Sbjct 159019 ATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTC 158960 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||||| || | || ||||| ||||| || | |||||| || Sbjct 158959 TCAATGGTATCAGAGGATTCAACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACG 158900 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 158899 AAGATTTGCATA 158888 >seq90 Length=625778 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || | || || ||||| ||||||||||| Sbjct 499396 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 499337 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 499336 ATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 499277 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || |||||||| ||||| || Sbjct 499276 TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 499217 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 499216 AAGATCTGCAT 499206 >seq2 Length=712398 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || | || || ||||| |||||||| || Sbjct 184706 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 184765 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 184766 ATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 184825 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| ||| ||||| |||||||| || ||||| || Sbjct 184826 TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 184885 Query 34971 AAGATCTGCATATTC 34985 || || ||||| ||| Sbjct 184886 AAAATTTGCATGTTC 184900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631871021736