Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq157 118 1e-21 >seq157 Length=558770 Score = 118 bits (130), Expect = 1e-21 Identities = 339/515 (66%), Gaps = 5/515 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| || ||||| | ||| | || |||||||| || || ||||| | || || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| || ||||| || || | || || || | || | || || | | Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAAAGAAACCAA 322396 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || || |||| ||| || | |||||| ||| | |||||||| || | Sbjct 322397 AAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAATCAG 322456 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| ||||| || || || | | ||||||||| || | | || || || || | ||| Sbjct 322457 TTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGACAAT 322516 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAA 18967 || |||| | | || | | || | | | ||||| | ||| |||| Sbjct 322517 CTTGTAGACG-TATCGACTGTTGGCTTATTCTTCAACAAGCT-AAACAAAAGACAAGCAA 322574 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| || || ||||||||||| || | |||||||| ||||| | || |||| Sbjct 322575 AGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCTGGCA 322634 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || | || || | |||||| || |||||||| || ||||| ||||| || || | Sbjct 322635 TCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATTCCCT 322694 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA-TTATTATGAATCCAT 19146 | || | || |||||||| || | |||| | || || | | || | | ||||| Sbjct 322695 CCACGACGGCGAAAGCAACAAGCCGTTCTGC-GAAGGAGGAAGACTTGTCAGAGATCCAC 322753 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 || || |||||||| ||||||||| | | |||||| Sbjct 322754 TTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||| || || || |||||||| ||||||| ||||| || ||| | | ||||| || Sbjct 323021 CACCTGGAAGCCATAGAAACATCTCGCTTCTGGAATCTGAACATCATTGGAGAATCTCTC 323080 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 || | || ||||| || || || || ||| || || || || | || || || Sbjct 323081 AACAAGGTTCTCATTCACGATGCCGTCCGAAGCAGCGAAGAAGGCAAGGACGTGGGAAAC 323140 Query 19404 AAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 ||| ||| || || | | | | ||| || || |||||| || || ||||| Sbjct 323141 AAAGAATTTCTCGTCATCACTGAGCTTCTCCCAGTCGCTAGCATCTTTGGACAAGTCTAC 323200 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511 ||||||||| ||||| || || || |||||||| || ||||| | ||| Sbjct 323201 TTCTTCAACAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCA 323248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105729480680