Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq378 122 7e-22 seq101 122 7e-22 seq94 122 7e-22 seq41 122 7e-22 seq335 93.3 3e-13 seq30 87.8 1e-11 >seq378 Length=341175 Score = 122 bits (134), Expect = 7e-22 Identities = 353/532 (66%), Gaps = 16/532 (3%) Strand=Plus/Minus Query 552057 ACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACAT 552116 ||| | | ||| || |||||||||| | ||| | |||| ||| |||| || Sbjct 16898 ACATTGGGACCTGTGAAACAAGTTTTGAAAGACGCTGGTCTTGAGAAACATCAAGTTGAT 16839 Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTT 552174 || || || ||||| |||||||| || | || || || || ||| |||| ||| Sbjct 16838 GATATCGTTCTTGTGGGTGGATCAACTCGTATCCCAAAGGTTGTTGAATTGTTGGAAGAA 16779 Query 552175 CTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTA 552232 || ||| | || || ||| | |||| | | |||||||||||||| ||||| || Sbjct 16778 -TTCTTTGGA-GGAAAGAAAGCG--TCAAAGGGCATCAATCCAGATGAGGCGGTTGCTTA 16723 Query 552233 TGGTGCCGCAATTCAAGCAGCTATTCTT-TCTGGACAAACTGATGAAAAACTACAAAATA 552291 ||||||||| ||||||| | | |||| |||||| || | ||| | || || | Sbjct 16722 TGGTGCCGCTATTCAAGGCGG-AGTCTTGTCTGGAGAACCGAATGGAC--CTG--AAGTC 16668 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 ||| |||| ||||| | ||| | | ||||| | ||||| || || ||||||| Sbjct 16667 TTGATCTTG--GATGTGAATCCATTGACACTTGGAATTGAAACCACAGGTGGAATTATGA 16610 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | || |||||| | | || ||| ||||| | || |||| | ||||| || Sbjct 16609 CCAAACTTATCAAACGGAACACTCAGATTCCAACTTCCAAGTCTCAAATCTTTTCAACAA 16550 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | | ||||| || | | ||| ||||||| | |||||||||||| || || || Sbjct 16549 ACGCTGATAACCAGCCAACGGTTCGAATTCAAGTGTTTGAAGGAGAACGAGCTTTGACGC 16490 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 || ||||| | | |||| ||| |||| || || || ||||||| |||||| Sbjct 16489 GTGACAATAACCTTTTGGGTAGTTTCGATTTGGATGGAATCGCTCCTGCAAAGCGTGGAA 16430 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 ||||||||||| |||||||| | || || |||||| | ||| | | ||| Sbjct 16429 CTCCGCAAATTGAGGTTACTTTTGCGATTGACGCCAATAGTATTCTTACTGT 16378 Score = 104 bits (114), Expect = 2e-16 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||||||| || ||||| | ||| || | ||||||||| ||| | || | Sbjct 17493 CACCAGAAGAAGTTTCAGCCATGATTCTGGGGAAAATGAAGGAAATCGGGGAAAATTATC 17434 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || || |||||| | ||||| | ||||| ||||| || || |||||| | || | Sbjct 17433 TAGGGCAGAGTGTTACGAAAGCAGTGGTGACTGTTCCAGCTTACTTCAATGACGCTCAGC 17374 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | ||||| || |||||||| || ||||| ||| | || || |||| || ||||||| Sbjct 17373 GACAAGCGACGAAAGATGCGGGTGTGATTGCAGGATTGGATATTATTCGAATCATCAATG 17314 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || || || ||| | || ||||||||||| || Sbjct 17313 AACCCACGGCAGCGGCAATCGCTTATGGACTTGACAA 17277 >seq101 Length=625741 Score = 122 bits (134), Expect = 7e-22 Identities = 345/526 (66%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 550015 CACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCA 550074 || ||| |||||||||||||||| | || || || |||||||| ||||| || || Sbjct 286774 CAAATACAGTTGTGTTGGTGTTTACAAGAACGGACGTGTCGAAATTATCGCCAACGACCA 286715 Query 550075 AGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGA 550134 ||| || | | ||| ||||| || ||| | ||||| || || | | | || || || Sbjct 286714 GGGTCACCGTATTACCCCATCCTACGTTGCCTTCACCGATGAGGAGCGTCTTGTCGGAGA 286655 Query 550135 TGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTT 550194 ||| || || | || ||| | || || ||||| || || || || ||||| ||| | Sbjct 286654 TGCCGCCAAGAACCAGGCCCCAATGAACCCAACCAACACCATCTTCGACGCTAAGCGTCT 286595 Query 550195 AATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCA 550254 |||| | | ||| | || | ||||||| || |||||||| | || ||| | Sbjct 286594 CGTTGGTCGTCGATTTGACGAGCAGGATGTTCAGAACGACATGAAGCACTTCCCCTTCAA 286535 Query 550255 AATTGTT---AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAA 550311 ||||| || | | ||||| || || | | || | | ||| | || Sbjct 286534 GGTTGTTGCCAAGGAT---GGAAAGCCAATCATCCAGGTTAAGGTTAAGGGAGAGGACAA 286478 Query 550312 ACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-A 550370 | || | ||||| |||| || | |||||| | ||| ||||| | | ||| | Sbjct 286477 GAAGTTCACTCCAGAGGAAATCTCTGCCATGGTTCTCCAGAAGATGAAGGAGATTGCCGA 286418 Query 550371 GTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATG 550430 || ||| | ||| || | ||||| | || || | ||||| ||||| || || || | Sbjct 286417 GT-CTTACCTCGGTGAAAAGGTTACCCACGCTGTCGTTACTGTCCCAGCCTACTTCAACG 286359 Query 550431 ACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTA 550490 || | || ||||||||||| || ||||| ||| ||||| || || | |||| |||| Sbjct 286358 ACGCCCAGCGTCAAGCTACCAAGGATGCCGGAACCATTGCCGGTCTCACTGTTGCCCGTA 286299 Query 550491 TTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | ||||| || || ||||| || || | || || || ||||| || Sbjct 286298 TCATCAACGAGCCAACTGCCGCCGCTATCGCCTACGGTCTTGACAA 286253 >seq94 Length=76867 Score = 122 bits (134), Expect = 7e-22 Identities = 343/523 (66%), Gaps = 8/523 (2%) Strand=Plus/Plus Query 550018 ATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGG 550077 ||| |||||||||||||||| | || || || |||||||| ||||| || || || Sbjct 64281 ATACAGTTGTGTTGGTGTTTACAAGAACGGACGTGTCGAAATTATCGCCAACGACCAGGG 64340 Query 550078 TAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGC 550137 | || | | ||| ||||| || ||| | ||||| || || | | | || || ||||| Sbjct 64341 TCACCGTATTACCCCATCCTACGTTGCCTTCACCGACGAGGAGCGTCTTGTCGGAGATGC 64400 Query 550138 AGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAAT 550197 || || | || ||| | || || ||||| ||||| || || ||||| ||| | | Sbjct 64401 CGCCAAGAACCAGGCCCCAATGAACCCAACCAACACTATCTTCGACGCTAAGCGTCTCGT 64460 Query 550198 TGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAAT 550257 ||| | | ||| | || | ||||||| || |||||||| | || ||| | | Sbjct 64461 TGGTCGTCGATTTGACGAGCAGGATGTTCAGAACGACATGAAGCACTTCCCCTTCAAGGT 64520 Query 550258 TGTT---AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACA 550314 |||| || | | ||||| || || | | | | | ||| | || | Sbjct 64521 TGTTGCCAAGGAT---GGAAAGCCAATCATCCAGGTCAAGGTTAAGGGAGAGGACAAGAA 64577 Query 550315 ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTG 550373 || | ||||| |||| || | |||||| | ||| ||||| | | ||| ||| Sbjct 64578 GTTCACTCCAGAGGAAATCTCTGCCATGGTTCTCCAGAAGATGAAGGAGATTGCCGAGT- 64636 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 ||| | ||| || | ||||| | || || | ||||| ||||| || || || ||| Sbjct 64637 CTTACCTCGGTGAAAAGGTTACCCACGCTGTCGTTACTGTCCCAGCCTACTTCAACGACG 64696 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | || ||||||||||| || ||||| ||| ||||| || || | |||| ||||| | Sbjct 64697 CCCAGCGTCAAGCTACCAAGGATGCCGGAACCATTGCCGGTCTCACTGTTGCCCGTATCA 64756 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || || ||||| || || | || || || ||||| || Sbjct 64757 TCAACGAGCCAACTGCCGCCGCTATCGCCTACGGTCTTGACAA 64799 >seq41 Length=104630 Score = 122 bits (134), Expect = 7e-22 Identities = 343/523 (66%), Gaps = 8/523 (2%) Strand=Plus/Minus Query 550018 ATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGG 550077 ||| |||||||||||||||| | || || || |||||||| ||||| || || || Sbjct 85244 ATACAGTTGTGTTGGTGTTTACAAGAACGGACGTGTCGAAATTATCGCCAACGACCAGGG 85185 Query 550078 TAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGC 550137 | || | | ||| ||||| || ||| | ||||| || || | | | || || ||||| Sbjct 85184 TCACCGTATTACCCCATCCTACGTTGCCTTCACCGATGAGGAGCGTCTTGTCGGAGATGC 85125 Query 550138 AGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAAT 550197 || || | || ||| | || || ||||| ||||| || || ||||| ||| | | Sbjct 85124 CGCCAAGAACCAGGCCCCAATGAACCCAACCAACACTATCTTCGACGCTAAGCGTCTCGT 85065 Query 550198 TGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAAT 550257 ||| | | ||| | || | ||||||| || |||||||| | || ||| | | Sbjct 85064 TGGTCGTCGATTTGACGAGCAGGATGTTCAGAACGACATGAAGCACTTCCCCTTCAAGGT 85005 Query 550258 TGTT---AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACA 550314 |||| || | | ||||| || || | | | | | ||| | || | Sbjct 85004 TGTTGCCAAGGAT---GGAAAGCCAATCATCCAGGTCAAGGTTAAGGGAGAGGACAAGAA 84948 Query 550315 ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTG 550373 || | ||||| |||| || | |||||| | ||| ||||| | | ||| ||| Sbjct 84947 GTTCACTCCAGAGGAAATCTCTGCCATGGTTCTCCAGAAGATGAAGGAGATTGCCGAGT- 84889 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 ||| | ||| || | ||||| | || || | ||||| ||||| || || || ||| Sbjct 84888 CTTACCTCGGTGAAAAGGTTACCCACGCTGTCGTTACTGTCCCAGCCTACTTCAACGACG 84829 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | || ||||||||||| || ||||| ||| ||||| || || | |||| ||||| | Sbjct 84828 CCCAGCGTCAAGCTACCAAGGATGCCGGAACCATTGCCGGTCTCACTGTTGCCCGTATCA 84769 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || || ||||| || || | || || || ||||| || Sbjct 84768 TCAACGAGCCAACTGCCGCCGCTATCGCCTACGGTCTTGACAA 84726 >seq335 Length=386496 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||||||||| ||||| ||||| || || | ||||| || || ||||||||||| || Sbjct 158509 ATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 158450 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAA 563437 || || || || || || |||||| ||||||| | || | | ||||| || | Sbjct 158449 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAG-GATTCAACCTCGAGGGTGA 158391 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || ||||| | ||| || |||||||| |||||| Sbjct 158390 TAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATA 158353 Score = 89.7 bits (98), Expect = 4e-12 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| | ||||| || || ||| |||||| ||| ||||| |||| || |||| Sbjct 38992 GAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCG 39051 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| | || ||||||||||| || | | ||||| ||||| || |||||||| Sbjct 39052 GCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTC 39111 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 || || || || || || || |||||| ||||| | | || | | || |||| Sbjct 39112 CTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAG-GATTCAACCTCAAGAG 39170 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || || ||||| | ||| || || || || |||||| Sbjct 39171 TAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 39211 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||||| || |||||| || || ||| ||||| |||| || || | Sbjct 159106 AGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGG 159047 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | || ||||| ||||| || | | |||||| || || ||||||||||| Sbjct 159046 CCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCC 158987 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 ||||| || || || || || |||||| ||||||| | || | | ||| | ||| Sbjct 158986 TTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAG-GATTCAACTTCCAAAGT 158928 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || ||||| | ||| || ||||| ||||||||| Sbjct 158927 GATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 158888 >seq30 Length=118212 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||||| || |||||| || || ||| ||||| |||| || || | Sbjct 48598 AGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGG 48539 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | || ||||| ||||| || | | |||||| || || ||||||||||| Sbjct 48538 CCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCCTTCC 48479 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 ||||| || || || || || |||||| ||||||| | || | | ||| | ||| Sbjct 48478 TTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAG-GATTCAACTTCCAAAGT 48420 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| || ||||| | ||| || || || ||||||||| Sbjct 48419 GATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCATA 48380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029272889469130