Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq335 132 4e-26 seq30 114 1e-20 >seq335 Length=386496 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| | || || |||||||||||||| || ||||| || | || |||| | | Sbjct 38995 ACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCC 39054 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || ||||| ||||||||||| || || || || || ||||| || Sbjct 39055 ATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTT 39114 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||| || |||||||| | Sbjct 39115 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAAT 39174 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||| || ||||| |||||||| Sbjct 39175 GGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||||||||| || || || ||||| |||| || ||| | | |||| || | ||| Sbjct 158863 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 158804 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||| || || || || ||||| || || || |||||||| || Sbjct 158803 TTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTG 158744 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||||| | || || |||||||||| || || || || Sbjct 158743 GCCTTGACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTG 158684 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 158683 AGGGTCTTGACGAAGATCTGCAT 158661 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| || || | ||||| || || || || || || |||||||| Sbjct 38525 TTTCCACCACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCA 38584 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | | |||| || | |||||| || || || ||||||||||| || || || Sbjct 38585 GAAAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGT 38644 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || ||||| || ||||| || || || || | || | || ||||||| || Sbjct 38645 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCA 38704 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| || |||||||| ||||| || ||||| || ||||| Sbjct 38705 ACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || ||||| || ||||| || | || || | | |||| ||| Sbjct 158334 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 158275 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 158274 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 158215 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | |||||| || | || ||||| | ||| | || || Sbjct 158214 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 158155 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| || ||||| Sbjct 158154 CCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 >seq30 Length=118212 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||||||||| || || || ||||| |||| || ||| | | |||| || | ||| Sbjct 48355 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 48296 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||| || || || |||||||| || || || |||||||| || Sbjct 48295 TTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCTTGAATCTTG 48236 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || |||| | |||||||| | || || |||||||||| || || || || Sbjct 48235 GCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTG 48176 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 48175 AGGGTCTTGACGAAGATCTGCAT 48153 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || ||||| || ||||| || | || || | | |||| ||| Sbjct 47826 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 47767 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 47766 AACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 47707 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | |||||| || | || ||||| | ||| | || || Sbjct 47706 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 47647 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 47646 CCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276289446009