Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq38 149 1e-30 seq13 149 1e-30 seq157 105 1e-17 >seq38 Length=108757 Score = 149 bits (164), Expect = 1e-30 Identities = 719/1123 (64%), Gaps = 43/1123 (4%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| || || | | ||||||||| || |||||||| | || || || ||||| Sbjct 87126 GTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGCATT 87185 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTG 213078 ||||||| || | | ||| | || |||| || | | | | || ||| |||| | Sbjct 87186 GGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAG-CGC-GAAGAGCAT 87243 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 |||||||| | |||| | | ||| | | |||||| | ||| ||||| Sbjct 87244 CCCAGTCCAAAT---CAGA--GTTGCTCAAA-TCAATGTTCCAAAGGTCTGGTTGCAACT 87297 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 ||||| || ||||| || | ||||| ||||| || || | | | ||| | || Sbjct 87298 GTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCT 87357 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258 | || || |||| || |||||||||||| ||| ||||||| |||| | |||| |||| | Sbjct 87358 CACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTT 87417 Query 213259 TGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTG 213316 | || || ||| ||| || | ||| ||| ||| |||| || || || || Sbjct 87418 TCGCTCCTTCGGAGTCGAATGGAAGACGCATC--TTGATGAAAGCATCGGCAAGTCCTTG 87475 Query 213317 GACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTA 213376 || || | ||||| |||| ||| | || ||| || || | ||| | ||||| Sbjct 87476 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 87535 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 || || ||| ||||||||||| | ||| ||| ||||| ||||| ||| || Sbjct 87536 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 87595 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGC 213496 | ||| | | | |||| | || | ||||| | || |||| ||| || Sbjct 87596 TTTCTCAAAGTCGTAA--GTAGTCTT-GTTCACAACAAAGGCTGGAAGGGAGATAGAAGC 87652 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 ||||| || ||||| | || | || |||||||| | ||| || ||||| ||||| Sbjct 87653 AAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTT 87712 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTA 213616 ||||| ||||||||||| |||||| ||||| ||||| ||| | ||| ||||| Sbjct 87713 ACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTA 87772 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 | |||||| |||| || ||||| || ||| | | || | ||| || | | Sbjct 87773 CAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCTG 87832 Query 213677 GGCCTTGACCACCCGCCTGAC-AGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 ||||||| || | | | | | | |||| || || ||| || || | | Sbjct 87833 AGCCTTGATAACTTTACGGGCCAACCCTTTGCGT----TCATATGATTCATAAAGTGCTT 87888 Query 213736 TGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCG---GGACACATGAGG 213791 || | | ||||||| | || |||| || || | | | ||||| | ||| Sbjct 87889 CAAACTTTTCGCCCCAGCAGTCT-TCCAACCCTGGC---GCTTCACTTGGACAGAAGAGA 87944 Query 213792 CTCCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 |||||| || | |||| || | || ||| |||| ||| || ||| || || Sbjct 87945 GACCAGTCACCATTG-CTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCATA 88003 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||||| ||| | | | | || || |||| || || ||||| || || || Sbjct 88004 GAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTC 88063 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CC 213967 |||||| || |||||||| ||||||| |||||| |||||||| || || | |||| || Sbjct 88064 AAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCC 88123 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || || ||||| | || | || | ||||||| || || | || | | | Sbjct 88124 TCCTTGATCCACA----TAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTC 88179 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 | || || |||||||||||||| || || ||||| |||||||| Sbjct 88180 CATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCGGAGGC 88222 >seq13 Length=692062 Score = 149 bits (164), Expect = 1e-30 Identities = 719/1123 (64%), Gaps = 43/1123 (4%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| || || | | ||||||||| || |||||||| | || || || ||||| Sbjct 276922 GTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGCATT 276981 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTG 213078 ||||||| || | | ||| | || |||| || | | | | || ||| |||| | Sbjct 276982 GGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAG-CGC-GAAGAGCAT 277039 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 |||||||| | |||| | | ||| | | |||||| | ||| ||||| Sbjct 277040 CCCAGTCCAAAT---CAGA--GTTGCTCAAA-TCAATGTTCCAAAGGTCTGGTTGCAACT 277093 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 ||||| || ||||| || | ||||| ||||| || || | | | ||| | || Sbjct 277094 GTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCT 277153 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258 | || || |||| || |||||||||||| ||| ||||||| |||| | |||| |||| | Sbjct 277154 CACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTT 277213 Query 213259 TGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTG 213316 | || || ||| ||| || | ||| ||| ||| |||| || || || || Sbjct 277214 TCGCTCCTTCGGAGTCGAATGGAAGACGCATC--TTGATGAAAGCATCGGCAAGTCCTTG 277271 Query 213317 GACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTA 213376 || || | ||||| |||| ||| | || ||| || || | ||| | ||||| Sbjct 277272 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 277331 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 || || ||| ||||||||||| | ||| ||| ||||| ||||| ||| || Sbjct 277332 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 277391 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGC 213496 | ||| | | | |||| | || | ||||| | || |||| ||| || Sbjct 277392 TTTCTCAAAGTCGTAA--GTAGTCTT-GTTCACAACAAAGGCTGGAAGGGAGATAGAAGC 277448 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 ||||| || ||||| | || | || |||||||| | ||| || ||||| ||||| Sbjct 277449 AAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTT 277508 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTA 213616 ||||| ||||||||||| |||||| ||||| ||||| ||| | ||| ||||| Sbjct 277509 ACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTA 277568 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 | |||||| |||| || ||||| || ||| | | || | ||| || | | Sbjct 277569 CAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCTG 277628 Query 213677 GGCCTTGACCACCCGCCTGAC-AGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 ||||||| || | | | | | | |||| || || ||| || || | | Sbjct 277629 AGCCTTGATAACTTTACGGGCCAACCCTTTGCGT----TCATATGATTCATAAAGTGCTT 277684 Query 213736 TGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCG---GGACACATGAGG 213791 || | | ||||||| | || |||| || || | | | ||||| | ||| Sbjct 277685 CAAACTTTTCGCCCCAGCAGTCT-TCCAACCCTGGC---GCTTCACTTGGACAGAAGAGA 277740 Query 213792 CTCCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 |||||| || | |||| || | || ||| |||| ||| || ||| || || Sbjct 277741 GACCAGTCACCATTG-CTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCATA 277799 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||||| ||| | | | | || || |||| || || ||||| || || || Sbjct 277800 GAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTC 277859 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CC 213967 |||||| || |||||||| ||||||| |||||| |||||||| || || | |||| || Sbjct 277860 AAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCC 277919 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || || ||||| | || | || | ||||||| || || | || | | | Sbjct 277920 TCCTTGATCCACA----TAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTC 277975 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 | || || |||||||||||||| || || ||||| |||||||| Sbjct 277976 CATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCGGAGGC 278018 >seq157 Length=558770 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||| | ||| ||||| | | |||||| | || ||||| || Sbjct 322568 CAAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGG 322627 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || ||||||||||| || | || || || ||||||||||| Sbjct 322628 CCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAA 322687 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || |||||||| | ||||| || |||| ||| |||| || | |||||| ||| Sbjct 322688 ATTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAG 322747 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| || ||||| || |||||||| | || ||||| Sbjct 322748 ATCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527711502080