Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq157 91.5 3e-13 seq38 91.5 3e-13 seq13 91.5 3e-13 >seq157 Length=558770 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935 || ||||| || || || || | |||||||| || || ||| ||||| ||||| || Sbjct 322722 GAACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTTCCTTTGCTTCC 322663 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCAT 25994 ||||||||||||||| || || ||||| || || ||| || || || |||||||| Sbjct 322662 ATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCT-TACATTCTCTAATGAGCTCAT 322604 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||| |||||||| ||||||| || ||||| || || Sbjct 322603 TTCCAGAGACGAGGGCCTCCACACTGACTTTGCTTGTCT 322565 >seq38 Length=108757 Score = 91.5 bits (100), Expect = 3e-13 Identities = 556/878 (63%), Gaps = 44/878 (5%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 || |||||||| ||| ||| | ||||||||| ||||||| || ||||| ||| | Sbjct 87371 CACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAG-CTCTTTCGCTCCTTCGG 87429 Query 221479 AGT-GAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||| ||| || | ||||| | | |||||| | ||||| ||||| || ||||| | |||| Sbjct 87430 AGTCGAATGGAAGACGCATCTTGATGAAAG-CATCGGCAAGTCCTTGAACTCCAAGACCG 87488 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || || | ||| | | |||| || || || || || || || || | ||| Sbjct 87489 ATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATTAATGTCA 87548 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| | |||| || ||||||||| |||| | || |||| Sbjct 87549 ATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCT-------- 87600 Query 221657 AACACCAACTCGCC-GCCGTCGTGGAGGGGTTCC--ACAAAAGCGTTTAGGGCAACGCTG 221713 | || ||| | ||| || ||| ||||| || |||| | Sbjct 87601 ----CAAAGTCGTAAGTAGTCTTG------TTCACAACAAAGGCTGGAAGGGAGATAGAA 87650 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || |||||||| ||||| | ||||| || |||| | ||| ||||| || ||| Sbjct 87651 GCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGG 87710 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 || |||||||||||||| |||| || | || |||||||||| || || || ||| Sbjct 87711 TTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTG 87770 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || | ||| | || |||||||| |||| | | | ||| || ||| || | | Sbjct 87771 TACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCT-T 87829 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGC---ACCCT---CGGTCTTTTCATACCCGGTATAG 221947 ||| || | ||| || | ||||| || || | | || | || || Sbjct 87830 CTGAGCCTT---GATAACTTTACGGGCCAACCCTTTGCGTTCATATGATTCA---TAAAG 87883 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG-GGACACAT 222006 || | |||||||||| || | || |||| ||||| | | | | ||||| | Sbjct 87884 TGCTT--CAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGG-CGCTTCACTTGGACAGAA 87940 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| ||||| ||| | || | || ||| || | ||| |||||| || || Sbjct 87941 GAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC 88000 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || | |||| | || | ||||| || | || ||| | ||||| | || Sbjct 88001 ATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAA 88060 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||||| || || |||||||| ||||||| |||| || | || ||||| |||||||| Sbjct 88061 TTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTT 88120 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||| || ||||||| ||| ||| | ||||||| ||||| |||| | | || Sbjct 88121 GCCTCCTTGATCCA-CATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTC 88179 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCG 222283 | || || | |||||||| || |||||||| |||| Sbjct 88180 CATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCG 88217 >seq13 Length=692062 Score = 91.5 bits (100), Expect = 3e-13 Identities = 556/878 (63%), Gaps = 44/878 (5%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 || |||||||| ||| ||| | ||||||||| ||||||| || ||||| ||| | Sbjct 277167 CACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAG-CTCTTTCGCTCCTTCGG 277225 Query 221479 AGT-GAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||| ||| || | ||||| | | |||||| | ||||| ||||| || ||||| | |||| Sbjct 277226 AGTCGAATGGAAGACGCATCTTGATGAAAG-CATCGGCAAGTCCTTGAACTCCAAGACCG 277284 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || || | ||| | | |||| || || || || || || || || | ||| Sbjct 277285 ATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATTAATGTCA 277344 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| | |||| || ||||||||| |||| | || |||| Sbjct 277345 ATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCT-------- 277396 Query 221657 AACACCAACTCGCC-GCCGTCGTGGAGGGGTTCC--ACAAAAGCGTTTAGGGCAACGCTG 221713 | || ||| | ||| || ||| ||||| || |||| | Sbjct 277397 ----CAAAGTCGTAAGTAGTCTTG------TTCACAACAAAGGCTGGAAGGGAGATAGAA 277446 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || |||||||| ||||| | ||||| || |||| | ||| ||||| || ||| Sbjct 277447 GCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGG 277506 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 || |||||||||||||| |||| || | || |||||||||| || || || ||| Sbjct 277507 TTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTG 277566 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || | ||| | || |||||||| |||| | | | ||| || ||| || | | Sbjct 277567 TACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCT-T 277625 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGC---ACCCT---CGGTCTTTTCATACCCGGTATAG 221947 ||| || | ||| || | ||||| || || | | || | || || Sbjct 277626 CTGAGCCTT---GATAACTTTACGGGCCAACCCTTTGCGTTCATATGATTCA---TAAAG 277679 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG-GGACACAT 222006 || | |||||||||| || | || |||| ||||| | | | | ||||| | Sbjct 277680 TGCTT--CAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGG-CGCTTCACTTGGACAGAA 277736 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| ||||| ||| | || | || ||| || | ||| |||||| || || Sbjct 277737 GAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC 277796 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || | |||| | || | ||||| || | || ||| | ||||| | || Sbjct 277797 ATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAA 277856 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||||| || || |||||||| ||||||| |||| || | || ||||| |||||||| Sbjct 277857 TTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTT 277916 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||| || ||||||| ||| ||| | ||||||| ||||| |||| | | || Sbjct 277917 GCCTCCTTGATCCA-CATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTC 277975 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCG 222283 | || || | |||||||| || |||||||| |||| Sbjct 277976 CATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCG 278013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839726185280