Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq335 129 4e-24 seq30 120 2e-21 seq378 111 1e-18 >seq335 Length=386496 Score = 129 bits (142), Expect = 4e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| || ||| || || ||||| || | | ||| Sbjct 38761 ACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGT 38820 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||| ||||||||||| |||||||||||||| || ||||| ||||| || Sbjct 38821 GCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACC 38880 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || |||||||| || ||| ||||||||| || | || | | || ||| Sbjct 38881 CTCCTTATCCTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAA 38940 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || || || || ||||| ||||| || || Sbjct 38941 -GGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTG 38979 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| ||| || | || || || | ||||| Sbjct 158882 ACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 158823 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| |||||||| || || || |||||||| || ||||| ||||| || Sbjct 158822 GCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACC 158763 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||| |||||| ||| || || |||| | | || |||| Sbjct 158762 CTCCTTGTCTTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAA-CCTCAA 158704 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| ||||| || || Sbjct 158703 GAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTG 158664 Score = 116 bits (128), Expect = 2e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | |||||||||||||||||||||||| || ||||| || || || || ||| Sbjct 158520 AGAGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 158461 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 |||||||||||||| || ||||| || || ||||| ||||||| | | | Sbjct 158460 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACC 158401 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| || || || | |||||| |||||||| || Sbjct 158400 TCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTG 158357 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| | ||||| || || ||| |||||| || || || |||| || || Sbjct 38989 ACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGT 39048 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | |||||| | |||||||| ||||| || | ||| || || ||||| || ||||| Sbjct 39049 TCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCC 39108 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| ||||| ||||| | | | | ||||| Sbjct 39109 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAG 39168 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | |||||| || || || || Sbjct 39169 AGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTG 39207 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | || || ||||| || || || | || ||||||| || || Sbjct 38533 ACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGT 38592 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||||||||| || || | ||| || || ||||| || ||||| Sbjct 38593 ACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCC 38652 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| ||||| || || ||||| ||||||| | | || || ||| Sbjct 38653 TTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAA 38712 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| | |||||| || || ||||| Sbjct 38713 -AGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTG 38751 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| ||| || || || || || |||| || || Sbjct 158347 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGT 158288 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | ||||||||||| ||||| | ||| || || || || || ||||| Sbjct 158287 GCGGCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCC 158228 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || || ||||| ||||| ||||||||| || | || | | || ||| Sbjct 158227 TTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAA 158168 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| ||||| || || ||||| Sbjct 158167 -AGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTG 158129 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || |||||||||||||| || ||||| || || ||||| ||||| || |||||| Sbjct 39408 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCCTTG 39467 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| |||||| || || || |||| | || ||||| || Sbjct 39468 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATT 39527 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || || ||||| ||||| Sbjct 39528 GTCTTTCCGGTGAGGGTTTTTACGAAGATTTG 39559 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || |||||||||||||| || ||||| ||||| || || || |||||||||||| Sbjct 157812 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCCTTG 157753 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || || || |||||| || ||||| |||| | || ||||| || Sbjct 157752 TCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATG 157693 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || || ||||| ||||| Sbjct 157692 GTCTTGCCGGTGAGGGTTTTTACGAAGATTTG 157661 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | ||||| || || ||| || || || || || |||| || || Sbjct 159110 ACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 159051 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| | |||||||||||||| || | |||||| || || || |||||||| Sbjct 159050 ACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCC 158991 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| || || ||||| || || ||||| ||||||| | | | ||| | Sbjct 158990 TTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAA 158931 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || | |||||| ||||| ||||| Sbjct 158930 AGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTG 158892 >seq30 Length=118212 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| ||| || | || || || | ||||| Sbjct 48374 ACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 48315 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| |||||||| || || || |||||||| || ||||| ||||| || Sbjct 48314 GCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACC 48255 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||| ||||| ||| || || |||| | | || |||| Sbjct 48254 CTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAA-CCTCAA 48196 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| ||||| || || Sbjct 48195 GAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTG 48156 Score = 102 bits (112), Expect = 5e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | ||| |||||||||||||||||||| || ||||| || || || || ||| Sbjct 48012 AGAGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 47953 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || || |||||||| || ||||| || || ||||| ||||||| | | | Sbjct 47952 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACC 47893 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| || || || | |||||| |||||||| || Sbjct 47892 TCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTG 47849 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| ||| || || || || || |||| || || Sbjct 47839 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGT 47780 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | |||||||| || ||||| | ||| || || || || || ||||| Sbjct 47779 GCGGCCATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCC 47720 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || || ||||| ||||| ||||||||| || | || | | || ||| Sbjct 47719 TTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAA 47660 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| ||||| ||||| ||||| Sbjct 47659 -AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 47621 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || |||||||||||||| || ||||| || || || || || |||||||||||| Sbjct 47303 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTG 47244 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || || || |||||| || ||||| |||| | || ||||| || Sbjct 47243 TCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATG 47184 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| |||||||| || ||||| Sbjct 47183 GTCTTGCCGGTGAGGGTCTTAACAAAGATTTG 47152 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | ||||| || || ||| || || || || || |||| || || Sbjct 48602 ACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 48543 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| | |||||||||||||| || | |||||| || || || |||||||| Sbjct 48542 ACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCC 48483 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| || || ||||| || || ||||| ||||||| | | | ||| | Sbjct 48482 TTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAA 48423 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || | |||||| || || ||||| Sbjct 48422 AGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTG 48384 >seq378 Length=341175 Score = 111 bits (122), Expect = 1e-18 Identities = 344/530 (65%), Gaps = 12/530 (2%) Strand=Plus/Minus Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414 || ||||||||| | || | | || || ||||| ||||| || ||||| || ||||| Sbjct 17801 TTCCAGTTGTGTCGGCGTGTACAAGAACGGCAAAGTCGAAATCATCGCCAACGAACAAGG 17742 Query 474415 TAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATC---TTATTGGAGA 474471 || ||| ||||| ||||| || | ||| || || | |||| | |||||||| Sbjct 17741 AAACCGAATCACACCCTCATACGTCGCGTTTTCTCAAGACGGTCATCGGATGATTGGAGA 17682 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATT 474531 | | || ||| | ||||| | || || || || || ||||| || || || | Sbjct 17681 TTCCGCAAAAAACCAAGCCTCGCTCAACCCAACCAACACAATCTTTGACGCGAAGCGACT 17622 Query 474532 GATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAA 474591 || || ||| || |||| || |||||||| | || | || || || Sbjct 17621 TATGGGACGTTCATTCATGGATAAGGACGTTCAATCTGACTTAAAACACTTTCCGTTCAA 17562 Query 474592 GGTGATAAATGTTGGT---GGTAAACCATATATAGAAGCAATACACGCA---GGTGAAAC 474645 ||| | ||| ||| || ||||| | | ||| | | | | || || || Sbjct 17561 GGTTTTGGATGATGGAAAGGGGAAACCGGTTGTGCAAG---TTGATGTAAAGGGAGACAC 17505 Query 474646 TAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC 474705 || | || |||| ||| || |||| | ||| || | | |||||||| ||| || Sbjct 17504 AAAGCGGTTCACACCAGAAGAAGTTTCAGCCATGATTCTGGGGAAAATGAAGGAAATCGG 17445 Query 474706 GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 | ||||| || || || || | ||||| | ||||||||||| || || || Sbjct 17444 GGAAAATTATCTAGGGCAGAGTGTTACGAAAGCAGTGGTGACTGTTCCAGCTTACTTCAA 17385 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 ||| |||| || ||||| || ||||||||||| |||||||| | || || | || Sbjct 17384 TGACGCTCAGCGACAAGCGACGAAAGATGCGGGTGTGATTGCAGGATTGGATATTATTCG 17325 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 || || |||||||| || ||||| ||| | |||||||| ||||| |||| Sbjct 17324 AATCATCAATGAACCCACGGCAGCGGCAATCGCTTATGGACTTGACAAGA 17275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268160454949676