Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq38 109 3e-19 seq13 109 3e-19 >seq38 Length=108757 Score = 109 bits (120), Expect = 3e-19 Identities = 219/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 |||||||||| | | ||| ||| |||| ||| || || |||||| || || | Sbjct 87931 TTGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGA 87990 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||||| || || |||| || | |||| ||||| || |||||| || | Sbjct 87991 TCCAGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGA 88050 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 |||| | ||| ||||| ||||||| ||||||||| || || ||||||||||| || Sbjct 88051 GATCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGG 88110 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 | || || |||||||| || || | ||||| | |||||| || | ||| | Sbjct 88111 GACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCG 88170 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| | |||| | ||| |||||| || | | ||| | || || | | | ||| | Sbjct 88171 GAATGATTCCATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCT 88230 Query 26190 CGTGAGCATGAATACCGATTCCACC 26214 ||| || |||||| || ||||| Sbjct 88231 TATGAATATTAATACCAATACCACC 88255 >seq13 Length=692062 Score = 109 bits (120), Expect = 3e-19 Identities = 219/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 |||||||||| | | ||| ||| |||| ||| || || |||||| || || | Sbjct 277727 TTGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGA 277786 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||||| || || |||| || | |||| ||||| || |||||| || | Sbjct 277787 TCCAGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGA 277846 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 |||| | ||| ||||| ||||||| ||||||||| || || ||||||||||| || Sbjct 277847 GATCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGG 277906 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 | || || |||||||| || || | ||||| | |||||| || | ||| | Sbjct 277907 GACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCG 277966 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| | |||| | ||| |||||| || | | ||| | || || | | | ||| | Sbjct 277967 GAATGATTCCATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCT 278026 Query 26190 CGTGAGCATGAATACCGATTCCACC 26214 ||| || |||||| || ||||| Sbjct 278027 TATGAATATTAATACCAATACCACC 278051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038652324775