Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq335 104 4e-17 seq90 87.8 3e-12 >seq335 Length=386496 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | || || || | |||| ||||| ||| || ||||| Sbjct 38981 ATACCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCA 39040 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| ||| || || || ||||||||||| || || | ||| || ||||| Sbjct 39041 GAGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGT 39100 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || |||| || | ||| ||| |||||||| || ||| Sbjct 39101 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCA 39160 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || | || || ||||| || ||||| Sbjct 39161 ACCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||| || || || || | ||| || ||||| || |||||||| || Sbjct 38599 ATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTT 38658 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| || | || ||| ||||| || ||||||||||| | ||| || Sbjct 38659 GTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGAT 38718 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || ||||| |||||||| Sbjct 38719 GGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||||||||| || || | | ||| || | || ||||| || ||||| | | Sbjct 38800 AATGTTATAGTCGGACAAAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACG 38859 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || ||||| || || || || ||||| || || |||| || | |||| |||||| Sbjct 38860 TTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTTTCAATAGT 38919 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||| ||||| ||||| | || || || || || || || || || || || || || Sbjct 38920 GTCGGATGACTCGACTTCCAAGGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTG 38979 Query 193358 CAT 193360 ||| Sbjct 38980 CAT 38982 >seq90 Length=625778 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | | ||| || ||||| || ||||| || || || || || Sbjct 499351 TGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATC 499292 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||||| ||||||||||| || || || || || || ||||| Sbjct 499291 TTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCC 499232 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTT 193362 || || || || || || || ||||||| Sbjct 499231 GTGAGGGTCTTGACGAAGATCTGCATTT 499204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649485637840