Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 2e-14 seq335 86.0 9e-12 >seq30 Length=118212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| ||||| || || ||||| ||| ||| Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || || ||||| ||||| || || || || || Sbjct 48441 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 48500 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | ||||| | ||| || |||||| | ||||| Sbjct 48501 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGA 48535 >seq335 Length=386496 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| || || || || ||||| ||| ||| Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || || ||||| ||||| || || || || || Sbjct 158949 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 159008 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | ||||| | ||| || |||||| | ||||| Sbjct 159009 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGA 159043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868002149200