Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq335 127 4e-24 seq30 89.7 1e-12 >seq335 Length=386496 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | || | ||||| ||||| || || || ||| Sbjct 38981 ATACCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCA 39040 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| ||||| || || || |||||||| || | ||| || |||||| Sbjct 39041 GAGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGT 39100 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || ||||| || | ||| || ||||| Sbjct 39101 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCA 39160 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||||| || || || | ||| |||||||| Sbjct 39161 ACCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| || || | || | |||| ||| || || || || ||||| Sbjct 159115 CCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 159056 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || ||||| || || ||||||||||| || | || || || ||||| Sbjct 159055 AGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGA 158996 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| ||||| || || || || || || || | ||| || ||||| ||| Sbjct 158995 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACT 158936 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| ||||| || ||||| || || || | || || ||||| Sbjct 158935 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 >seq30 Length=118212 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| || || | || | |||| ||| || || || || ||||| Sbjct 48607 CCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 48548 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || ||||| || || ||||||||||| || | || || || ||||| Sbjct 48547 AGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGA 48488 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| ||||| || || || || || || || | ||| || ||||| ||| Sbjct 48487 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACT 48428 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || || || ||||| || || || | ||| || ||||| Sbjct 48427 TCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 48381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984474487834950