Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq38 132 1e-25 seq13 132 1e-25 seq413 86.0 2e-11 seq1 86.0 2e-11 >seq38 Length=108757 Score = 132 bits (146), Expect = 1e-25 Identities = 385/581 (66%), Gaps = 19/581 (3%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || || || || ||| |||||| | |||||||||||| || |||| |||| Sbjct 87685 TGTACTCGACGATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGT 87744 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 |||| || |||||||| ||||| ||||| | ||||||||||| || ||||| | || | Sbjct 87745 TAGACTTGCTGTTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAG 87804 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC--TTC 155806 || | ||| ||| || | | || || || ||| | | || || Sbjct 87805 ACTCAATAATGGCGTACCAAAGCTTCTGAGCCTTGATAA-CTTTACGGGCCAACCCTTTG 87863 Query 155807 CGACTCATAT--TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864 || |||||| |||||| | || ||| | | || || | || || || || Sbjct 87864 CGT-TCATATGATTCATAAAGTGC-TTCAA-ACTTTTCGCCCCAGCAGTCTTCCAACCCT 87920 Query 155865 GGGCACTTATCGGGG-CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923 || | ||| | || || || || ||||| ||| | ||||||| |||||| Sbjct 87921 GG-CGCTTCACTTGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAA 87979 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCC---TTTGACTCCTCATCGCC 155980 | |||| ||| | ||||||||| | ||| | || ||| ||||| | || Sbjct 87980 CAAGTCACAGATCCAGAGAGCATAGAACAAGTCTCGAGCGCGGTTT---TCCTCTTTACC 88036 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||||||| || || | |||||| ||||| | || |||||||| || || Sbjct 88037 AGTATTCTTCTTGAGATCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGAT 88096 Query 156041 AGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| || | | | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 88097 AGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAA 88156 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 ||||| ||||| ||||| || ||||| ||| || |||||||| ||| | |||||| Sbjct 88157 GACACGAAGCATCGGAATGATTCCATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACC 88216 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 || | |||| |||||||||| | ||||||||||||| Sbjct 88217 GGAGGCACGAATCTTATGAATATTAATACCAATACCACCTG 88257 >seq13 Length=692062 Score = 132 bits (146), Expect = 1e-25 Identities = 385/581 (66%), Gaps = 19/581 (3%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || || || || ||| |||||| | |||||||||||| || |||| |||| Sbjct 277481 TGTACTCGACGATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGT 277540 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 |||| || |||||||| ||||| ||||| | ||||||||||| || ||||| | || | Sbjct 277541 TAGACTTGCTGTTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAG 277600 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC--TTC 155806 || | ||| ||| || | | || || || ||| | | || || Sbjct 277601 ACTCAATAATGGCGTACCAAAGCTTCTGAGCCTTGATAA-CTTTACGGGCCAACCCTTTG 277659 Query 155807 CGACTCATAT--TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864 || |||||| |||||| | || ||| | | || || | || || || || Sbjct 277660 CGT-TCATATGATTCATAAAGTGC-TTCAA-ACTTTTCGCCCCAGCAGTCTTCCAACCCT 277716 Query 155865 GGGCACTTATCGGGG-CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923 || | ||| | || || || || ||||| ||| | ||||||| |||||| Sbjct 277717 GG-CGCTTCACTTGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAA 277775 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCC---TTTGACTCCTCATCGCC 155980 | |||| ||| | ||||||||| | ||| | || ||| ||||| | || Sbjct 277776 CAAGTCACAGATCCAGAGAGCATAGAACAAGTCTCGAGCGCGGTTT---TCCTCTTTACC 277832 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||||||| || || | |||||| ||||| | || |||||||| || || Sbjct 277833 AGTATTCTTCTTGAGATCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGAT 277892 Query 156041 AGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| || | | | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 277893 AGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAA 277952 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 ||||| ||||| ||||| || ||||| ||| || |||||||| ||| | |||||| Sbjct 277953 GACACGAAGCATCGGAATGATTCCATTCGAATGTCCGTTGGTTCCAGCAATGTACGAACC 278012 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 || | |||| |||||||||| | ||||||||||||| Sbjct 278013 GGAGGCACGAATCTTATGAATATTAATACCAATACCACCTG 278053 >seq413 Length=198394 Score = 86.0 bits (94), Expect = 2e-11 Identities = 199/297 (67%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 354604 TCAATATGATGAAATGCGTGCTGTGCGACATAAGCGAGACGCATATTAGGATGTTTCACG 354663 ||||| || || || ||||| || ||||| || |||| ||| ||||| || ||| | Sbjct 100753 TCAATGTGGTGGAAAGCGTGTTGGGCGACGTAGGCGATACGGGCGTTAGGGTGCTTCCAG 100812 Query 354664 ACCTTTGCGGCTCCCTCTTCGTTGGGTTCAATTTCACCAACCATCAACTTAATCATTGTA 354723 || | | ||| || || || | | ||| ||| || | ||| ||||| ||| Sbjct 100813 ACATCTCCGG-------TTTGT--GGAACGACTTCTCCAGTCAAGACCTTGATCATGGTA 100863 Query 354724 GACTTTCCAGCACCATTAACACCTATTACTGCGATACGGGACGCCATAGAGACCTGAACC 354783 |||||||||||||| || |||| | | ||| |||||| ||||| |||||||||| Sbjct 100864 GACTTTCCAGCACCGTTCTCACCGACACATCCGACACGGGAGGCCATGGAGACCTGAATG 100923 Query 354784 GAAATGTTATTGAGTGTATTCGTCTCGCGAGATGGATATTTGAATGATACATCGGA-CAT 354842 | ||||| ||| || | | | | ||| || |||| | ||||| || ||| Sbjct 100924 GTGATGTTGAAGAGAGTTGGCTTGGTGTTACCTGGGTAGGTGAA-GTCACATCCGACCAT 100982 Query 354843 CTTGATGAGCGCCTTTGTGCGTGATGTAACACCCTCTAGCATTCCTGGTTCAGGGAA 354899 ||| ||||| ||||| | || || | | |||||| | |||||| || ||||| Sbjct 100983 CTTCATGAGGGCCTTGGAACGAGACTTGATACCCTCAATTGGTCCTGGCTCTGGGAA 101039 >seq1 Length=1023498 Score = 86.0 bits (94), Expect = 2e-11 Identities = 199/297 (67%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 354604 TCAATATGATGAAATGCGTGCTGTGCGACATAAGCGAGACGCATATTAGGATGTTTCACG 354663 ||||| || || || ||||| || ||||| || |||| ||| ||||| || ||| | Sbjct 421197 TCAATGTGGTGGAAAGCGTGTTGGGCGACGTAGGCGATACGGGCGTTAGGGTGCTTCCAG 421256 Query 354664 ACCTTTGCGGCTCCCTCTTCGTTGGGTTCAATTTCACCAACCATCAACTTAATCATTGTA 354723 || | | ||| || || || | | ||| ||| || | ||| ||||| ||| Sbjct 421257 ACATCTCCGG-------TTTGT--GGAACGACTTCTCCAGTCAAAACCTTGATCATGGTA 421307 Query 354724 GACTTTCCAGCACCATTAACACCTATTACTGCGATACGGGACGCCATAGAGACCTGAACC 354783 |||||||||||||| || |||| | | ||| |||||| ||||| |||||||||| Sbjct 421308 GACTTTCCAGCACCGTTCTCACCGACACATCCGACACGGGAGGCCATGGAGACCTGAATG 421367 Query 354784 GAAATGTTATTGAGTGTATTCGTCTCGCGAGATGGATATTTGAATGATACATCGGA-CAT 354842 | ||||| ||| || | | | | ||| || |||| | ||||| || ||| Sbjct 421368 GTGATGTTGAAGAGAGTTGGCTTGGTGTTACCTGGGTAGGTGAA-GTCACATCCGACCAT 421426 Query 354843 CTTGATGAGCGCCTTTGTGCGTGATGTAACACCCTCTAGCATTCCTGGTTCAGGGAA 354899 ||| ||||| ||||| | || || | | |||||| | |||||| || ||||| Sbjct 421427 CTTCATGAGGGCCTTGGAACGAGACTTGATACCCTCAATTGGTCCTGGCTCTGGGAA 421483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809359201269