Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq49 131 2e-24 seq394 127 2e-23 seq112 104 3e-16 seq198 100 3e-15 >seq49 Length=98384 Score = 131 bits (144), Expect = 2e-24 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || | |||||||||||| || | || Sbjct 44694 GCTTGGCAAGCTCTCCTGGGAGAATCAAACGGACAGAGGTCTGGATCTCACGGGACGAGA 44753 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 | ||| | |||||| | ||| |||| | |||||| | |||| || || | Sbjct 44754 TAGTGGATCTCTTGTTGTA-TGCAGCCAACTTGGAGGCCTCCGACGCGATACGCTCAAAG 44812 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||||||||||||||||||| ||||| | |||||| ||||| || || ||| Sbjct 44813 ATGTCGTTGACAAACGAGTTCATGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGG 44872 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||||||||||||||||||||||| | || |||||||| Sbjct 44873 TGCACCTGCTTGAGCACCTTGTAGATGTAGGAGGAGTACGA 44913 Score = 125 bits (138), Expect = 9e-23 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || | ||| |||||||| || | || Sbjct 92930 GCTTGGCAAGCTCTCCTGGGAGAATCAAACGGACCGAGGTTTGGATCTCACGGGACGAGA 92989 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 ||||| | |||||| | ||| |||| | |||||| | |||| || |||| Sbjct 92990 TCGTGGATCTCTTGTTGTA-TGCAGCCAACTTGGAGGCCTCCGACGCGATACGCTCGAAG 93048 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| |||||||||||||||| ||||| | |||||| ||||| || || ||| Sbjct 93049 ATGTCGTTAACAAACGAGTTCATGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGG 93108 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||||||||||||||||||||||| | || ||||| || Sbjct 93109 TGCACCTGCTTGAGCACCTTGTAGATGTAGGAGGAGTAAGA 93149 >seq394 Length=885996 Score = 127 bits (140), Expect = 2e-23 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || | |||||||||||| || | || Sbjct 115728 GCTTGGCAAGCTCTCCTGGGAGAATCAAACGGACCGAGGTCTGGATCTCACGGGACGAGA 115787 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| || |||| | |||||| | |||| || || | | Sbjct 115788 TGGTGGATCTCTTGTTGTAGGCAGCCAACTTGGAGGCCTCCGACGCGATACGCTCAAAGA 115847 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||||| | |||||| ||||| || || |||| Sbjct 115848 TGTCGTTAACAAACGAGTTCATGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGGT 115907 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||||||||||||||||||||| | || |||||||| Sbjct 115908 GCACCTGCTTGAGCACCTTGTAGATGTAGGAGGAGTACGA 115947 Score = 127 bits (140), Expect = 2e-23 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || | |||||||||||| || | || Sbjct 295302 GCTTGGCAAGCTCTCCTGGGAGAATCAAACGGACCGAGGTCTGGATCTCACGGGACGAGA 295243 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 | ||| | |||||| | ||| |||| | ||||||| || ||| || |||| Sbjct 295242 TGGTGGATCTCTTGTTGTA-TGCAGCCAACTTGGAGGCCTCGACGC-GATACGCTCGAAG 295185 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| |||||||||||||||| ||||| | |||||| ||||| || || ||| Sbjct 295184 ATGTCGTT-ACAAACGAGTTCATGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGG 295126 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||||||||||||||||||||||| | || |||||||| Sbjct 295125 TGCACCTGCTTGAGCACCTTGTAGATGTAGGAGGAGTACGA 295085 Score = 122 bits (134), Expect = 1e-21 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || | |||||||||||| || | || Sbjct 164179 GCTTGGCAAGCTCTCCTGGGAGAATCAAACGGACAGAGGTCTGGATCTCACGAGAAGAGA 164238 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 | ||| | |||||| | ||| |||| | |||||| | |||| || || | Sbjct 164239 TGGTGGATCTCTTGTTGTA-TGCAGCCAACTTGGAGGCCTCCGACGCGATACGCTCAAAG 164297 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| || ||||||||||||| ||||| | |||||| ||||| || || ||| Sbjct 164298 ATGTCGTTAACGAACGAGTTCATGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGG 164357 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||||||||||||||||||||||| | || |||||||| Sbjct 164358 TGCACCTGCTTGAGCACCTTGTAGATGTAGGAGGAGTACGA 164398 >seq112 Length=954752 Score = 104 bits (114), Expect = 3e-16 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 |||| || |||| ||||||||||| || |||||||| | ||||| | |||||| |||| Sbjct 211416 CGATACGTTCGAAAATGTCGTTGACGAATGAGTTCATAATAGACATGGCCTTGTTAGAGA 211475 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | || || |||||||||||||| || |||||||||||| | || |||||||| Sbjct 211476 TACCAGTCTCTGGGTGCACCTGCTTAAGAACCTTGTAGATGTAGGAGGAGTACGA 211530 >seq198 Length=42743 Score = 100 bits (110), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 |||| || |||| ||||||||||| || |||||||| | ||||| | |||||| |||| Sbjct 36857 CGATACGTTCGAAAATGTCGTTGACGAATGAGTTCATAATAGACATGGCCTTGTTAGAGA 36916 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | || || || ||||||||||| || |||||||||||| | || |||||||| Sbjct 36917 TACCAGTCTCTGGATGCACCTGCTTAAGAACCTTGTAGATGTAGGAGGAGTACGA 36971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107103337733529