Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq394 183 5e-40 seq49 181 2e-39 seq198 136 6e-26 seq112 136 6e-26 >seq394 Length=885996 Score = 183 bits (202), Expect = 5e-40 Identities = 199/259 (77%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || || | | Sbjct 295340 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCTGGGAG 295281 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | |||||||||||| |||| ||| ||| | |||||| || | Sbjct 295280 AATCAAACGGACCGAGGTCTGGATCTCACGGGACGAGATGGTGGATCTCTTGTT-GTATG 295222 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | ||||||| || ||| || |||| |||||||| ||||||||||||| Sbjct 295221 CAGCCAACTTGGAGGCCTCGACGC-GATACGCTCGAAGATGTCGTT-ACAAACGAGTTCA 295164 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||| Sbjct 295163 TGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGGTGCACCTGCTTGAGCACCTTGT 295104 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| |||||||| Sbjct 295103 AGATGTAGGAGGAGTACGA 295085 Score = 176 bits (194), Expect = 7e-38 Identities = 196/259 (76%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| ||||| |||||||| |||||||||||| |||| || || || | | Sbjct 115690 GTACTTGGTGACAGCCTTAGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCTGGGAG 115749 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | |||||||||||| |||| ||| ||| | |||||| || | Sbjct 115750 AATCAAACGGACCGAGGTCTGGATCTCACGGGACGAGATGGTGGATCTCTTGTT-GTAGG 115808 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | |||||| | |||| || || | |||||||| ||||||||||||| Sbjct 115809 CAGCCAACTTGGAGGCCTCCGACGCGATACGCTCAAAGATGTCGTTAACAAACGAGTTCA 115868 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||| Sbjct 115869 TGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGGTGCACCTGCTTGAGCACCTTGT 115928 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| |||||||| Sbjct 115929 AGATGTAGGAGGAGTACGA 115947 Score = 172 bits (190), Expect = 9e-37 Identities = 195/259 (75%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || || | | Sbjct 164141 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCTGGGAG 164200 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | |||||||||||| || | ||| ||| | |||||| || | Sbjct 164201 AATCAAACGGACAGAGGTCTGGATCTCACGAGAAGAGATGGTGGATCTCTTGTT-GTATG 164259 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | |||||| | |||| || || | |||||||| || |||||||||| Sbjct 164260 CAGCCAACTTGGAGGCCTCCGACGCGATACGCTCAAAGATGTCGTTAACGAACGAGTTCA 164319 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||| Sbjct 164320 TGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGGTGCACCTGCTTGAGCACCTTGT 164379 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| |||||||| Sbjct 164380 AGATGTAGGAGGAGTACGA 164398 >seq49 Length=98384 Score = 181 bits (200), Expect = 2e-39 Identities = 197/259 (76%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| ||||| |||||| |||| || || || | | Sbjct 44656 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCAAGCTCTCCTGGGAG 44715 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | |||||||||||| |||| ||| ||| | |||||| || | Sbjct 44716 AATCAAACGGACAGAGGTCTGGATCTCACGGGACGAGATAGTGGATCTCTTGTT-GTATG 44774 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | |||||| | |||| || || | |||||||||||||||||||||| Sbjct 44775 CAGCCAACTTGGAGGCCTCCGACGCGATACGCTCAAAGATGTCGTTGACAAACGAGTTCA 44834 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||| Sbjct 44835 TGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGGTGCACCTGCTTGAGCACCTTGT 44894 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| |||||||| Sbjct 44895 AGATGTAGGAGGAGTACGA 44913 Score = 181 bits (200), Expect = 2e-39 Identities = 197/259 (76%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || || | | Sbjct 92892 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCTGGGAG 92951 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | ||| |||||||| |||| ||||||| | |||||| || | Sbjct 92952 AATCAAACGGACCGAGGTTTGGATCTCACGGGACGAGATCGTGGATCTCTTGTT-GTATG 93010 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | |||||| | |||| || |||| |||||||| ||||||||||||| Sbjct 93011 CAGCCAACTTGGAGGCCTCCGACGCGATACGCTCGAAGATGTCGTTAACAAACGAGTTCA 93070 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||| Sbjct 93071 TGATGGACATGGCCTTGTTCGAGATACCGGTCTCTGGGTGCACCTGCTTGAGCACCTTGT 93130 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| ||||| || Sbjct 93131 AGATGTAGGAGGAGTAAGA 93149 >seq198 Length=42743 Score = 136 bits (150), Expect = 6e-26 Identities = 187/259 (72%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| || || || ||||| |||||||| ||| | || ||||| || | | Sbjct 36714 GTACTTGGTGACAGCTTTTGTTCCCTCAGAGACGGCATGCTTAGCGAGTTCTCCTGGGAG 36773 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | ||| |||||||| |||| ||| ||| | |||||| || | Sbjct 36774 AATCAAACGGACAGAGGTTTGGATCTCACGGGATGAGATTGTGGATCTCTTGTT-GTAAG 36832 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | ||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 36833 CAGCCAACTTGGAAGCCTCAGACGCGATACGTTCGAAAATGTCGTTGACGAATGAGTTCA 36892 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | ||||| ||||| || || || ||||||||||| || ||||||| Sbjct 36893 TAATAGACATGGCCTTGTTAGAGATACCAGTCTCTGGATGCACCTGCTTAAGAACCTTGT 36952 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| |||||||| Sbjct 36953 AGATGTAGGAGGAGTACGA 36971 >seq112 Length=954752 Score = 136 bits (150), Expect = 6e-26 Identities = 187/259 (72%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| || || || ||||| |||||||| || | || ||||| || | | Sbjct 211273 GTACTTGGTGACAGCTTTTGTTCCCTCAGAGACGGCATGTTTAGCAAGTTCTCCTGGGAG 211332 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||| || || | ||| |||||||| |||| ||| ||| | ||||||| | | Sbjct 211333 AATCAAACGGACAGAGGTTTGGATCTCACGGGATGAGATGGTGGATCTCTTGTTA-TAAG 211391 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | ||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 211392 CAGCCAACTTGGAAGCCTCAGACGCGATACGTTCGAAAATGTCGTTGACGAATGAGTTCA 211451 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | ||||| ||||| || || |||||||||||||| || ||||||| Sbjct 211452 TAATAGACATGGCCTTGTTAGAGATACCAGTCTCTGGGTGCACCTGCTTAAGAACCTTGT 211511 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | |||| |||||||| Sbjct 211512 AGATGTAGGAGGAGTACGA 211530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916199914316843