Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq30 158 8e-34 seq335 149 4e-31 seq90 132 3e-26 seq2 129 4e-25 >seq30 Length=118212 Score = 158 bits (174), Expect = 8e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||| ||||| ||||| || || |||| |||| Sbjct 48364 AGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 48305 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||| || ||||||||||| |||| | ||||||||||| Sbjct 48304 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCT 48245 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | ||| | ||| || |||| || |||||| Sbjct 48244 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 48185 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||||||||| || ||||||||||| Sbjct 48184 TTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || |||||| |||||||| ||||| || ||| |||| |||| Sbjct 47829 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 47770 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||| |||| || ||||||||| | || | || ||||| || Sbjct 47769 TCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 47710 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || | |||||| || | || |||||| Sbjct 47709 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTC 47650 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||| ||||| Sbjct 47649 TTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||| | | | || ||| ||||| | ||| ||||||||||||||| ||||| Sbjct 48610 TTTCCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCA 48551 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || | || |||| |||||||| || ||||||| ||||||||||| | Sbjct 48550 GAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGT 48491 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || ||||| || | || || || ||| | || | ||| || || Sbjct 48490 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCA 48431 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || |||||||| || | ||||| |||||||| ||||| Sbjct 48430 ACTTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 48381 Score = 96.9 bits (106), Expect = 2e-15 Identities = 116/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || |||||||| || ||||| || || ||||||||| | || | || |||||| Sbjct 47303 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTG 47244 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | ||||| ||||| || || || | ||| || |||||| || | ||| | Sbjct 47243 TCCTGGATTTTCGCCTTGAC--ATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGA 47186 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 ||||||| || ||||||||||| |||||||| |||| Sbjct 47185 TGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq335 Length=386496 Score = 149 bits (164), Expect = 4e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||| ||||| ||||| || || |||| |||| Sbjct 158872 AGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 158813 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||| || ||||||||||| | || | ||||||||||| Sbjct 158812 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCT 158753 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | ||| | ||| || |||| || |||||| Sbjct 158752 TGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 158693 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||||||||| || ||||||||||| Sbjct 158692 TTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || |||||| |||||||| ||||| || ||| |||| |||| Sbjct 158337 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 158278 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| ||||| |||| || ||||||||| | || | || ||||| || Sbjct 158277 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 158218 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || | |||||| || | || |||||| Sbjct 158217 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTC 158158 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| |||||||| ||||| Sbjct 158157 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||||||||||| || | |||| |||| Sbjct 38771 AGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCT 38830 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||| || || ||||||||||| | || | |||||||| || Sbjct 38831 TCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCC 38890 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | || | |||||| || | ||| |||||| Sbjct 38891 TGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTC 38950 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || ||||||||||| Sbjct 38951 TTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||||| ||| ||||||||| ||||| || || || ||| | || |||| Sbjct 38542 CAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCATC 38601 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||| |||||||||| || |||||||| | || | || |||||||| Sbjct 38602 CTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTC 38661 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| | ||| || || | || ||||| Sbjct 38662 TTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGT 38721 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||| |||||||| ||||| Sbjct 38722 CTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || |||||||| ||||| || ||| | || |||| |||| ||||||||||| ||| Sbjct 39020 TCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAG 39079 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||||| | || | || |||||||| | || || ||||| || Sbjct 39080 ATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 39137 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || || || || |||| || ||||||||||| || | ||||| | Sbjct 39138 TCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGA 39197 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 39198 CAAAGATCTGCAT 39210 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||| | | | || ||| ||||| | ||| ||||||||||||||| ||||| Sbjct 159118 TTTCCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCA 159059 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || | || |||| |||||||| || ||||||| ||||||||||| | Sbjct 159058 GAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGT 158999 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || ||||| || | || || || ||| | || | ||| || || Sbjct 158998 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCA 158939 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || ||||||||||| || | ||||| || ||||| ||||| Sbjct 158938 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || |||||||| || ||||| || || |||||||| | || | ||||||||| Sbjct 39408 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCCTTG 39467 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | || || ||||| || || || | ||| || |||||| || | ||| | Sbjct 39468 TCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGA 39525 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 | |||||||| |||||||| ||||| ||||| |||| Sbjct 39526 TTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 >seq90 Length=625778 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||| | ||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 499418 CAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTC 499359 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 499358 CTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTC 499299 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | || | ||| || || | ||| ||||| Sbjct 499298 CTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGT 499239 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||||||||||| || ||||||||||| Sbjct 499238 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 >seq2 Length=712398 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||| | |||| ||||||||||||||| ||||| || ||| | || | || Sbjct 184684 CAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTC 184743 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||| || || |||||||| | || | ||||||||||| Sbjct 184744 CTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTC 184803 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || || | ||| ||||| Sbjct 184804 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGT 184863 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||| |||||||| || || || |||||| Sbjct 184864 CTTTCCCGTAAGGGTCTTGACGAAAATTTGCATG 184897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691065380503