Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq335 107 1e-18 seq30 105 5e-18 >seq335 Length=386496 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 158887 CCTCCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAG 158828 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || || || | || | | |||||| || || ||| Sbjct 158827 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGA 158768 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| |||||||| ||| || | |||||| |||| | ||||||||| || || Sbjct 158767 ATACCCTCCTTGTCTTG-AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAAC 158709 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || | ||| || || || |||||||| Sbjct 158708 CTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | ||||| |||||||| || ||||||||||| || | Sbjct 38756 CCTCCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGAC 38815 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || ||||| | || | | |||||| || || ||| Sbjct 38816 AAAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGA 38875 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || || || ||| || | || ||| |||| | |||||| || || || Sbjct 38876 ATACCCTCCTTATCCTG-AATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGAC 38934 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || ||||| | || || || || |||||||| Sbjct 38935 TTCCAAGGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || | || || || ||||||||||||||||| || || | | ||| || Sbjct 38995 ACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCC 39054 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| | ||||| || || || || || || || Sbjct 39055 ATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTT 39114 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | || || || ||| || |||||||| || Sbjct 39115 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAAT 39174 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || || || ||||| |||||||| Sbjct 39175 GGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||||||||| || || | | |||||| Sbjct 158341 ACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCC 158282 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||||| || || || || || || || Sbjct 158281 ATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTT 158222 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||||| |||| | |||||| || || ||||| | ||| || Sbjct 158221 ATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAAT 158162 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| || ||||| Sbjct 158161 GGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 >seq30 Length=118212 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || ||||| || || ||||| || || | | ||||| Sbjct 48368 ACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCC 48309 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || || | || | | |||||| || |||||||||||||| || Sbjct 48308 ATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTT 48249 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||| |||| | ||||||||| || || |||||||| | Sbjct 48248 GTCTTG-AATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGA 48190 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||| || || || |||||||| Sbjct 48189 TGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||||||||| || || | | |||||| Sbjct 47833 ACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCC 47774 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || || | ||||| | ||||| || || || || || || || Sbjct 47773 ATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTT 47714 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||||| |||| | |||||| || || ||||| | ||| || Sbjct 47713 ATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAAT 47654 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || || || || ||||| Sbjct 47653 GGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217148346617