Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq30 158 2e-33 seq335 152 1e-31 >seq30 Length=118212 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || | ||| || ||||| || ||||| || || || ||||| Sbjct 48607 CCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 48548 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| | || |||||||||||||| | | ||| || || || || Sbjct 48547 AGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGA 48488 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||| || ||||| || || || || ||||| |||||| | ||| ||| Sbjct 48487 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACT 48428 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 48427 TCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 48381 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || |||||||| ||||| || || || || | Sbjct 48381 TACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGG 48322 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || ||||| || ||||| || | ||| || || || | Sbjct 48321 AGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCG 48262 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| || || || ||||| || || ||| || || | Sbjct 48261 GAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAA 48202 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || ||||| || || | ||||| || || |||||||| Sbjct 48201 CCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||| || || || || || || |||| Sbjct 47846 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAG 47787 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | || ||||| || || || | | || || ||||| | Sbjct 47786 AGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTG 47727 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| || ||||| || || || |||||||| || || | || | Sbjct 47726 GGATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGA 47667 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || ||||| || || | ||||| || || || ||||| Sbjct 47666 CTTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| ||| | | || || || ||||| |||||||||||||| || | || || |||| Sbjct 48017 CAGAGAGAGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 47958 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || || ||||| || || ||||| || || || || ||||| |||||| | || Sbjct 47957 GTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATT 47898 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 47897 CAACCTCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 47846 Score = 102 bits (112), Expect = 2e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| ||| | | |||||||| || || |||||||||||||| || | || || |||| Sbjct 47320 CAGAGAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 47261 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || ||||||||||| || || || || || || ||||| || || || ||| | | Sbjct 47260 GTGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACT 47201 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 | || || | || || |||||||| || | ||||| ||||| || |||| Sbjct 47200 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq335 Length=386496 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || | ||| || ||||| || ||||| || || || ||||| Sbjct 159115 CCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 159056 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| | || |||||||||||||| | | ||| || || || || Sbjct 159055 AGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGA 158996 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||| || ||||| || || || || ||||| |||||| | ||| ||| Sbjct 158995 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACT 158936 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 158935 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | ||| ||||| || || ||||| || || |||||||| || | | || Sbjct 38539 ACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCC 38598 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| |||||||| ||||| | | || || || || || ||||||||||| Sbjct 38599 ATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTT 38658 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || || || ||||| |||||| | || ||||||||||| || Sbjct 38659 GTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGAT 38718 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| || ||||| Sbjct 38719 GGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| | ||| ||||| ||||| ||||| || ||||| || | Sbjct 38754 TACCTCCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGG 38813 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| || || |||||||| || || || | ||| || || || | Sbjct 38814 ACAAAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTG 38873 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| |||||||| || || ||||||||||| || || | || | Sbjct 38874 GAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGA 38933 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || | ||||| || || |||||||| Sbjct 38934 CTTCCAAGGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||| | ||| |||||||||||||| || || || || |||| Sbjct 38982 TACCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAG 39041 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| || ||||| | || ||||| |||||||| | | || || || || | Sbjct 39042 AGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTG 39101 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 39102 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAA 39161 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 39162 CCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | ||| || |||||||| ||||| || || || || | Sbjct 158889 TACCTCCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGG 158830 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || ||||| || ||||| || | ||| || || || | Sbjct 158829 AGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTG 158770 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| || || |||||||| || || ||| || || | Sbjct 158769 GAATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAA 158710 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || ||||| || || | ||||| || || |||||||| Sbjct 158709 CCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||| || || || || || || |||| Sbjct 158354 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAG 158295 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | || |||||||| || || | | || || ||||| | Sbjct 158294 AGAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTG 158235 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| || ||||| || || || |||||||| || || | || | Sbjct 158234 GGATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGA 158175 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 158174 CTTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 Score = 122 bits (134), Expect = 2e-22 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| ||| | | || ||||| ||||| |||||||||||||| || | || || |||| Sbjct 158525 CAGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 158466 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || ||||||||||| || || ||||| || || || || ||||| |||||| | || Sbjct 158465 GTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATT 158406 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 158405 CAACCTCGAGGGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 158354 Score = 102 bits (112), Expect = 2e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| ||| | | |||||||| || || |||||||||||||| || | ||||| |||| Sbjct 157829 CAGAGAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTG 157770 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || ||||||||||| || || || || || || ||||| || || || ||| | | Sbjct 157769 GTGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACT 157710 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 | || || | || || |||||||| || | || ||||| || || |||| Sbjct 157709 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| ||| | | ||||||||| || || |||||||||||||| || | || || || | Sbjct 39391 CAGAGAGAGTACGACCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAG 39450 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || || ||||| ||||| ||||| || || ||||| || || || ||| | | Sbjct 39451 GTGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACT 39510 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 | || || | || || ||||| || || | || ||||| || || |||| Sbjct 39511 CGACCTCGAGGGTGATTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821702688143