Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq335 118 1e-21 seq90 118 1e-21 seq30 109 5e-19 seq157 98.7 1e-15 seq38 87.8 2e-12 seq13 87.8 2e-12 >seq2 Length=712398 Score = 127 bits (140), Expect = 2e-24 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||||||||| ||||| || ||||| || | || ||| ||||||||||||||| Sbjct 184699 GGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT--ACGGCCGTCCTCGAGCTGCTTT 184756 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||||||||| || ||||| || |||||||| |||||| | Sbjct 184757 CCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 184816 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||| | ||||||| | ||| || |||| ||||| ||| || || || || Sbjct 184817 TTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGG 184876 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || |||||||| |||||| Sbjct 184877 GTCTTGACGAAAATTTGCATG 184897 >seq335 Length=386496 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || || | ||||| ||||| ||||| || ||||| |||||||| Sbjct 157813 GTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCCTT 157754 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||| | ||| | ||||| | || ||| || |||| ||||| Sbjct 157753 GTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGAT 157694 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 ||| |||||||| || ||||||||||| || |||| Sbjct 157693 GGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || || | ||||| ||||||||||| || || || || ||||| Sbjct 39407 GTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCCTT 39466 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | ||| | ||||| | || ||| || |||| ||||| Sbjct 39467 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 39526 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 || || ||||| || ||||||||||| || |||| Sbjct 39527 TGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || |||||||| | || | | | ||||| || ||||| || Sbjct 38558 GTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCA-TCCTCAAGTTGCTTTCC 38616 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||| ||||||||||| |||||| ||| Sbjct 38617 AGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTT 38676 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || | | ||| || || | |||| ||| |||||||||| ||| Sbjct 38677 CACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGTCTTGCCGGTCAAAGT 38736 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 38737 CTTGACAAAGATTTGCAT 38754 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || || | ||||| ||||||||||| || || || ||||||||| Sbjct 158508 TCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTG 158449 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||||| || || | || || || |||| ||||| Sbjct 158448 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACCTCGAGGGTGATA 158389 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| ||| || |||||||||||||| Sbjct 158388 GTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 158354 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || || | || | ||||||||||| || ||||| ||||||||| Sbjct 39056 TCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTG 39115 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||||| || |||| || || || || | || | | Sbjct 39116 TCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATG 39175 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| ||| || || || |||||||| Sbjct 39176 GTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 >seq90 Length=625778 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| ||||||||||||||| || Sbjct 499403 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 499344 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 499343 GGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 499284 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| ||| || || || || || Sbjct 499283 GACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGT 499224 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 499223 CTTGACGAAGATCTGCAT 499206 >seq30 Length=118212 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || || | ||||| ||||||||||| || ||||| |||||||| Sbjct 47304 GTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCCTT 47245 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||| | ||| | ||||| | || ||| || |||| ||||| Sbjct 47244 GTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGAT 47185 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 ||| |||||||| || || || || || || |||| Sbjct 47184 GGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || || | ||||| ||||||||||| || || || || |||||| Sbjct 48000 TCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCCTCCTTG 47941 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||||| || || | || || || |||| ||||| Sbjct 47940 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACCTCGAGGGTGATA 47881 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| ||| || |||||||||||||| Sbjct 47880 GTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 47846 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || ||| |||| | ||||||||||| || ||||| |||||||| Sbjct 47772 TCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTA 47713 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| ||||||| | ||| || || | || | | Sbjct 47712 TCCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATG 47653 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || ||||| || ||||| Sbjct 47652 GTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 >seq157 Length=558770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 || || |||||||| ||||| ||||||||||| | || || ||||| || || || Sbjct 322565 AGACAAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTA 322624 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||| | ||| | |||||| |||| |||| |||||| || || ||| Sbjct 322625 AGGCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAG 322684 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | |||||||||| ||| || || || | || || || || | | | |||| Sbjct 322685 AAAATTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCA 322744 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 ||||||||| | ||||| |||||||| || Sbjct 322745 GAGATCCACTTGAGAGCCCAATCGGCCTTCTT 322776 >seq38 Length=108757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 219/333 (66%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127 ||||| || ||||||||||| ||||| || |||| |||| || |||||| | Sbjct 86883 ATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGACA 86942 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 |||||||| | | ||||| || | | ||||| || |||||| || || || || Sbjct 86943 GTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTGATGCGTTGGACTGATCCATTC 87002 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | |||| ||| | || ||| ||| | ||| || ||| ||| ||| | Sbjct 87003 TCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCCTTC 87062 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 | || | | ||||||| | || || || || || || || || || || | ||| Sbjct 87063 AACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATATTG 87122 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || || |||||||||| |||||||||| || | |||||| | |||| ||| || ||| Sbjct 87123 CTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGC 87182 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCG 148400 || || | || || ||||| || | |||| Sbjct 87183 ATTGGAGCCATCAACAAAGAGTTTCGGACACCG 87215 >seq13 Length=692062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 219/333 (66%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127 ||||| || ||||||||||| ||||| || |||| |||| || |||||| | Sbjct 276679 ATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGACA 276738 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 |||||||| | | ||||| || | | ||||| || |||||| || || || || Sbjct 276739 GTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTGATGCGTTGGACTGATCCATTC 276798 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | |||| ||| | || ||| ||| | ||| || ||| ||| ||| | Sbjct 276799 TCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCCTTC 276858 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 | || | | ||||||| | || || || || || || || || || || | ||| Sbjct 276859 AACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATATTG 276918 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || || |||||||||| |||||||||| || | |||||| | |||| ||| || ||| Sbjct 276919 CTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGC 276978 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCG 148400 || || | || || ||||| || | |||| Sbjct 276979 ATTGGAGCCATCAACAAAGAGTTTCGGACACCG 277011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418159313880