Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq335 111 1e-19 seq30 100 2e-16 >seq335 Length=386496 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | || ||||| |||||||| |||||||| || || Sbjct 38983 ACCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGA 39042 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||| || ||||||||||| |||||||||||||| || | || Sbjct 39043 GAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGG 39102 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | | |||| || | ||| ||| ||||| | Sbjct 39103 GATTCCTTCCTTGTCCTGGATCTT-GGCCTTGACATTCTCAATGGTATCGGAGGATTCAA 39161 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || || || || ||||||||||||||| Sbjct 39162 CCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 39211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| ||| ||||| |||||||| || || Sbjct 158353 ACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 158294 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || ||||| || ||||| || ||||||||||||||||| ||| | || Sbjct 158293 GAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGG 158234 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || | | || | || | |||||| ||| || | Sbjct 158233 GATTCCTTCCTTATCCTGGATCTT-GGCCTTGACGTTTTCAATAGTGTCGGATGACTCGA 158175 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || || |||||||| |||||| Sbjct 158174 CTTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCATA 158125 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || || | || |||||| ||| || || ||||||||||| || Sbjct 38528 CCACCACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 38587 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| ||||| || || |||||||||||||| || | || Sbjct 38588 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGG 38647 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| || | || | ||| || || || || Sbjct 38648 ATTCCTTCCTTGTCTTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCAGACGACTCAAC 38706 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || || || || |||||||| |||||| Sbjct 38707 TTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCATA 38755 >seq30 Length=118212 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| ||| ||||| |||||||| || || Sbjct 47845 ACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 47786 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || ||||| || |||||||| ||||||||||||||||| ||| | || Sbjct 47785 GAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGG 47726 Query 33642 CACACCTTCTTTGTC 33656 | ||||| || || Sbjct 47725 GATTCCTTCCTTATC 47711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702249343040